Id Trinity | TRINITY_DN50150_c0_g1_i7 |
---|---|
Name Transcript | Ll_transcript_279219 |
Sequence | CAATTAAACTCTTCCTCAGAGGAGTCAAAAATCATAAAATATTATAAAAATTTGCGATGGAATGTGGGGGGAGGGCGCTTTACCTTCTTTATTTTTTGGC ATAGACGGGGGATTCCTTTATATGGTCTTTTTCCTTGAGTCAGGACCTCGGGCTATGGAGCCTGGTTTGGTCCTAGACTTGTGCCCGGTTTCGGGACCTG TGTTCGTGATCGGGCGTGTGGGGACTGGTTGGAGTGCTTAGAGTCTTAGCCGGTGTTGTTATGCCGGGATGTCGCCAACCTGCAATTCCGGTAATGGAAG TGAGGATGCCAACAGTTGATGATGGACATGGTTGGTGCACTGAAGCCCTGAATAGAAGTTATGGTGGTAGACTAGATTTGGTTACTGTTGAGAAGAAAGC TTAATGTGATATACAACATCATCATGTGCGTGTGTGTGTCTCCCTTTTTTACTATCGTTTTCTTGTTCATGTGTATCTGTGTGTAATGTTGGTAATTGTA TATTAAACTATGGAATAATATATATATATATGCTTCAAGGCTTTGGTTGTAAGTTGTAACATGCTTGCAATGGAATTAATGACACATCATGATTCAGAAA GGGATCATTAACATGGATTCTTTCTATTACTAATTCATAATCATGATTTTTTAAAAAGAAAAAATAAATCATATGTTTCTTAATTAAGATATTTAATTAA GATGTTATTAACGGTGTTGGTTCAAATGATACAGGAGAGAGGATTTCCATACTTACTTAAAAGGAAACTGTATATTGGCCACGCCAATCACATTCTTACG TGGCACTATCATAATCGTCCAATCACAATGACGTCATAATCATATCAGCGTAAACTAATTCATATTTCATGGAATTGGAACAAAATGTTGTGTTTCTTCA TTCCATTGTAGCATAAGAAAAGTATTGGAACAAAATAATATTTAATTAATAATTAAAGGAGCACTGCACCGCATTCTTCAAATCCCTAACCAAAATTCTC TCTCTCTTTCTCTCTCTCTCTCTCTCTCTCTATCATCATTCCCTCTCCTCGCTCCATTCGCTTTCTCACCCTCCAATTGCCTCCACACGATGAAATTCCC GAGGTAAGATTCTTTTCTAATCTTCCTTTCCTGTTTTGTTTTTCGTCTTCGGGATATATTTCTGCCATTTCAATTCTTTATTCATTCAGATCTGATTGTG TCTTGTGGGATTTCTGTAGATCATGATTTAGGGTTTTATTGGTTTTCTTTTGGGGCTGAATGTGTACATGGTTTTTTAGAGGGTGAGTCTGTCTTGACGC AATTGTAGGGTTTGATAATGTGAAGTTCCCTGGTCAAATTTTAGAAATAGCCTGAGGCGGGATAATAAGATTTTGTAAATTTACTTTCCCTTTTTTGGTT TTGGGAGATGGAAGTGGGAATGAGATCAGGTGGCCCTTCTGGGGTTCTGGTGAAGAAGAAGAATGCCTCCGGTTGTTTAATTGTTCGAAAGAAAGTGAAT GATGCTGTCGATGCTGCTGCTACTACTACTACTACTGCTCTTGCTATTGGTTCATCTTCCACTTCTCGCAAGTTCCATGGAAGGCCTCGCACCATGCCTT TCAATGATTCTGGGTCCAGTGGTGAGTTACTGATGCCTCATAGCAATAAAAGGCCAGGCCCCGACGCTGTTCGACTCTATAATGGTTTGACTCCATTTGA ACCTGGTGTGGCACCGGGGAGTGAATTTGGTAGGAAGAGGGGTAATGGTGAAGCTCTGATTGCGGAGAATGGTTTGGACAAGAGAGAAAGGAAACGCGGT AAGTTGGATGTGTGTAATTTCAGTGAGTATGACGCTATGGATGCAGGGAAAATGAGGAGGAGACATGTTGATGATAACAGAGTTGGGTTTGGAGGAGGAA GGTTTACGGGGCCAGTGCATGATGCTAGGGAATTTGGAACAGGGTCAAGCAGAGATTTCCTTGATAAGATAAGGAATTCCTACTATGACAGGCCAAGTGA CTTCTATCTGGGGGATAGTGCTGATCACAACAGGTTAAAGATGAACAGGGATGGAGCTCCGCTTCCTCCACCCTTGTCGAAGGAGAAGTTTAATTCACCT GAATTCATTAGGATTCAAGGTAAAAATGGTGTTTTGAAGGTAATGGTTAATAAGAGGAAGATCAATGGGCCATCAGAACACTATGCTCATCATAAACCTG TGGAAAGCATGCAAAGGTTGAGGACCGAGGCATTTGCCAATAAGAATGTTCTGAATCATCCCTCGTCATATATTGAAACAAAACTTGCTCAGGAACCAGG TTTGCACGTTAGGCCAGAGAAGAAACAAATAGCATCAAGAAAATCTTTGTCCAGCAAGGACAGTAAGGGTGATGAGTGGGATTCAGACGATGGTGACACA TCACTGAATCCAGTACTAAAAAATGCCGAAGTTTGCAAGCCTGAGAAAAAGATAATATCTGAGCATGAGAAAACCATTACTGGAGATTGCAAATCTAAGA AGATAATCTCTGAAGATGAACAGACTCCTATGCATGAAAAGCTTCAGACTTCGGGAATTAAAGAAGGACAAATCAAGCGTGGTAGTGGCACAGAAAAACA AAAACTGCGAGAACGAATTAGGGAGATGTTGCTGAATGCAGGTTGGACCATAGACTATCGGCCTCGAAGGAATAGAGACTACCTTGATGCAGTTTACATT AATCAAGCAGGTACTGCCTACTGGTCTATCATCAAGGCCTATGAAGCATTTCAAAAGCAATTGAATGTTAATGTTGATGAGGCCAAGCCCAAAGGAGATA GTTCTTCCTTTGCTCCTATAGCAGATGATGTGCTCAGTCAATTGACAAGGAAAACTAGGAAGAAAATGGAGATAGAATTGAAGAAAAATAATAAGAAGAA AAGACATGATAATGAAATTGACAGTAGAAATGAGCCTCACATTAAAAGATGTTCCAGCAGCAAGCATGATATGAATGGCATGGATGGTGATAGCAATGAA GATAAGTTAAGCTCCTTTATGAAGCAGGGAAGTAAGCAATTGAAAAATAAGATGATTGCAAATACCACTGCCAATGCCAGCTGTAAAAGCCAGAACACTA CCGACCACTCAAATGATCGAAAAGAAAACTCATATTCAGGATGTGATCCTCATCTTATACATGGAAGGAAGAGCGGAAAGTATGGAAGATGCACACTTTT AGTTCGTAATTCTAACAAGGGATTAAATTCAGAGTCTGATGACTTTGTCCCACATACAGGCAAACAGACAGTGCTTTCTTGGTTGATTGATTGTGGAGCA GTTGTGTTAAGCCAAAAAGTTCAGTACCGTAGACGGAAGAAGGTAGTGTTGGAAGGATGGATCACAAGAGATGGTATTCATTGTGGCTGCTGTAGTAAGA TCCTCACAGTTTCAAAGTTTGAGCTTCATGCAGGAAGCAAATTGTCCCACCCATATCAAAACATATACTTGGAATCTGGAGTTTCTCTTCTACAATGCCA GATAGATGCATGGAACAGACAAGAGACTTCTGAGAAAATTGGTTTCCATTCAGTGGATATGAATGGCGATGATGCACATGATGATACTTGTGGCATATGT GGAGATGGAGGGGATTTAATCTGTTGTGATAGGTGTCCATCAACATTTCATCAGAGCTGCTTGGATATACAGATACTTCCTCCTGGTGAATGGCATTGTC CAAATTGCACCTGTAAATTTTGTGGGGTAGCTAGCGGAACTTCTAAAAATGATGATGCAACTCTGTATGCTCTACGCACTTGCAACTCATGTGACAAAAA ATATCACGACTCTTGCACCAAGGAGTTGGATGTCCTTCCTAATTGCTCCAATACATCAGACCCTTCTTTTTGTGGGAAAGAGTGCAAAGAGCTTTTTGAG AACTTGAAGAAATACACTGGTTTCAAGCATGAACTAGAAGGAGGCTTTTCATGGTCTCTTATTCATAGAACAGATGAAGACTCAGAGGCAGATAATAGAG GAACTGCCCATAGGGTCGAATGCAATTCCAAGCTAGCTATTGCACTGACTGTAATGGATGAATGCTTTTCCCCCGTTGTTGATCGGAGGAGTGGAATTAA TATGATTCGTAATGTTTTATACAATAGCGGGTCAAATATCAGTCGCTTGAGTTACTGTGGCTTTTACACTGCTATTTTGGAGCGAGGAGATGAAATCCTT TCTGTGGCATCTCTCAGGTTCCATGGGACTAAGTTAGCAGAAATGCCATTCATTGGAACTCGCTATATATATAGGCGCCAGGGGATATGCCGCCGGCTTT TTTCTGCCATTGAATCGGCTCTTTGCTCTTTGAAGGTTGAGAATCTGGTTATTCCTGCAATTGGTGAACTCATGCATACATGGACAACAAATTTTGGCTT TACACATCTTGAGGAATCACTGAGGCATGAAATGAGGTCATTGAAGATGCTGGTTTTCCCTGGTATAGATATGTTACAGAAACTATTAGTGGAGCAAGGA AAACATGAGGGCATTACAGTCGCCGGAGGTTCGTCAGCTATGCAAGATCTTAATGGAAATGATGATGCCAGTTCAGGTTCCGCCAATGAGATAAATGATG AATCCAGTGGTGCTTCTGAAGAAGCAAACGGTCAAGGTTCAGTGGACAGGACTTCTTGTTCTAAATCTCATTCTGAGGAAAGGTTATCTGATGATTCAGT TTCAGATAGATGTGCTACTCCTAGTACTAGTCATGGTGCACTAGACATGAAAACTGGAATAGCAATGGCTCTTCCCGTTGATGATGAATTGAATCCTTCT CCCAAATGTCAACGCGTTTCACCTAAAGACAATTCTGTGAACAGTCACCCCTTAGATGTTTCGGATTGCAACGAAATTCCAACTTCGGTTCAGGAAGCTG CTTGTCGCGATCCTTGTTCAGCGGAAAAACTTAACAAGAAATGTCTCCCATTCGCTGCTATGAATCATGATTCATCCAAGGTTGACATTAATCTGGTGTT GGATTCTCAAGTGGCGGACAATACTCTCTCCTCTAAAGAGGTTCATTTGAATGATGTACACGAGGCTCTTGAAGCTGCCCCTTCAGGGAATTTATCAGAT GAGAACATAACAAAGTAGAATAATAAGAATGTAGATTATGTGATTCTGCTCTTAATCATGCTGATGATGAGAGTTTGAGTTTGTTGCAAGTAAAAGACTT GATTTCAATGGTGAAATTGCATGCAAGGGAGTAAATAATTTATGTTTGAACTCAGAAGTTGCTTCAAATGAAATGTATTAAAGAGCTTATTCAATTCCTT GTATGCAAATCAACTTTCAAGCCTTTTTTTTGAGGTTATATGTCCCATGCTTTGATCTGATTAGCATGGATAAACCTATATTAATTTCAATGGAAAAATA TTGTTTGGTCCCTTATGTTATTGGCATGTACAATTTCTTAATGGGCCTTTTTCTTTCTTTAATGTTAAAACGGC BLAST |
Tissue | pods |
Gene name | LI_gene_175020; |
Additional information | details; |
PAB | abscising pods |
PNAB | non-abscising pods |
PS1 | seeds stages 1-3 |
PS2 | seeds stages 4-6 |
PS3 | seeds stages 7-8 |
PW1 | pods wall stages 1-3 |
PW2 | pods wall stages 4-6 |
PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_279219
Blastp | Increased DNA methylation 1 from Arabidopsis with 40.44% of identity |
---|---|
Blastx | Increased DNA methylation 1 from Arabidopsis with 40.44% of identity |
Eggnog | PHD(ENOG410Y0W7) |
Kegg | Link to kegg annotations (AT3G14980) |
CantataDB | - |
Mirbase | - |
Ncbi protein | Link to NCBI protein (XP_019420778.1) |
Pfam | TPL-binding domain in jasmonate signalling (PF16135.4) |
Rfam | - |
GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |