| Id Trinity | TRINITY_DN50155_c0_g1_i6 |
|---|---|
| Name Transcript | Ll_transcript_278863 |
| Sequence | AGATTTAATTATTATAATAATTGAACCATTTGGCCACAAAACATTGATTTATCTCTTTCTTTGATTGTGGTGGGAGTGGATGATTTAAATTTGAAAGGAG AAAGAAAAGTTTGAGTGAGAGAATGGATTGCAGATTTGCGTCATTGTTCGAGAAAGTGCAACATCCATGGCTTCCCCCATCCACTTGGGAATCCATACCA AGCGAGAACGGACGATTACGTTCTTCTTCTTCTTCTTCTTCTTCAAATCAACCTCCTCAATCCCTCTCTTCTCTCTCTGAGTCAACTCTGGTTGGTTTGG TGATGAATGCAATGCAAGGTTTAGAGTCTTCCCTCATTGCTATCCAAAACATCTCTCACATCTTCTCTACCCTTCCTCCTCATACTCACAACATCTCTTC TCTCTGGAATCGATCTTCCACCACTCATTCCTTCTCTAAAATTCTTCATTCCATTGCTTCCGTTGGTTCCCTTGTTTTCCTTCTCCGTCATTTTGTCAAC TATTTCACTCATAATATCTCCACTCTTGTTAATCAAGCATTCGCGGTTGCCGTCGGCAAGGTCTTGGAAGGTTACATCTCTTCACTACACACTATTCATC CTTCCTCACTCTTAAGGCGATCCAAAAATCTTCATTCCCCTCTCTCTGGATGTCTCAACACTGTTCTTCTTTCTGAATTTACATTGCTTGAGTTTTACCT CCACACCAAACAACTTAGGACTCAGATTCAAGCCCTCTCAACCATCTGTAACCTTCGTAATTGGCCTCATACTTCTTTTCAGGATCTCACTGCTCAAGCT ACTTCTCACTTTTCTAACTTTTACAGAGGGGGGGATTTATTGACTTTTTTGTATACCCAATTACAGGTAGCTGATCCTGCTCACTCTACCCTGCTCAAGT TTCTCTTTCTTCGATCGTCTGAACCATATTGTGGGTTCATCAGATCGTGGATTTTCAAGGCAGAAATCTATGACCCATATAATGAGTTTATTGTAGAAAG TATGGACTCTCTATCTCCCAAGTCATGTGACGTTAAATATGGCATTTCTCTTGACCTACAATTCGCAAGCACCAGGGTACGAGATGGAGTTTCCATTCCT GCATTTCTTAAAGACTACTTGGTTCCATTTGTAAGAGCTGGTCAGCAGCTTCAAGTGCTCTTGAAATTGCTTGGACTGTGCATCCATGTTCCCGGAGACC ATAGTTCAGATGACTTCCTTCCCTGCTGGAGTGGTTTTTCAAGCAATAATCCATCTCATTCTTCTCCATTGACTTTCAGCAGAGATATTATAGCAGCTAT GGTGGTTGCAAGAGAGAGTTACTATAAAAGGATGAATGATAAAATTGAAAGCCTTTTAAGTAGTTTAGAAGTTAGATATCAACAGGTTACACATGATTCA ATACCTTCTTTTGATAATGGTGGAGGGGCTTTGGACAATCTTGATCAGTTCATCTCAGAAGACAAATCCATTGTTCGTCCAACAGAAGATAAAGCAAGTT CAAATATGGGCACTGATGGTTTGGGATCTGATGTCTCAAGTACAGTAGATGATTTCTCTTTGCTGGAAGATATGTATGATTCATCTGAAAGTTCATCCTT GAGTAGCTCTGAGGAGCAATTGGAGTCTGATCTGCTTAGTGGGTGGCCTTGTCCATTAGCTGTGCAACAAAACCCTTTACCTGGATTATGCTTTAGTAAG AGTAGAACCTTACATAGTTCAATAAAAAATTCCCCTCGTCATGAAAAGTCAGGGAGTGATTTGCTTAGAAACTTTGATAAGATCGAGCCCAGTGATAATT TGGTGATGTCCTGCCACAAGGAAATGATATCAAGTAACATGTCCATTCCTCTAAATCGTGAGGAATCGAGCTCTTCATGTATATTCAGCGTTCAATACAG AGAAAGTTTGACTGATAGTTTTTCGGCAATGAGCCACCTATTGAAAAACTCATTTCTTGATGATGAATCTATTGGAAAAAAAGTGAATGAAAAGCACCTG GGATCCCTAAGATATTCCATGTCATCCCAAGATATTCTTGCCATTAGTGATACGTTGAGAGGGGAAGTAATGAGTGAGGATCAACCAGATAACAGTACAC TTGCTTCAAATTGGTATACTTTTCAACCACAAAGATTTGACCATCAGTGTAATATTCCTAGCATTAATCCCCTTAGTATGAACCCAATGTTGACAAGAAA CGCATTACTTCACCAGATAGGTAGGAATCGAGAAAAAGGTAAAGCAGATCATGAACAACCATTGCCTTACTTCAACTTTTCTATGGTGGAAGACCCTTGT AAGGTTTATCTGGACAAGTCACCCACCAACTCAAGATGTAGAGGTGCATCTTCATTTTCACTTGACAGTAGTGCGTCTACTCACGGGAGTAAGAATAATC AATGTGGCAAATTGGGCCATGGTACAGAGGATGGGTTGGTTGATGTTACCGAGAAATGTTTTGTTGCTTCATCAGATTCGAAGGACCATAAACAAGATGT TTCTACAGCTGTATCCGGTGGGAGCAGCTGGGAAAGATTGCTTGGTAGTTTTAGGGAAACCGTCAATTGTGATGCTACCCACAAGCAGAGTTTGGTGTCA ACATTTGAGATACCACTGGATATTATAATAGACAAATGCTTATTGCAGGAAATTATGCTTCAGTATCCTTATCTTTATGTTTACTAGTTGATTAGTTTAT GCATAATGTTATGCATTTCATTCCTCTATTGCCTCTATTTCTCTGCAGTCTGCATGATACATCAATTAAACTGGCATCAATTTGTCATGAATAACCAATC CGTTAATGAATTCTAACATCTGGGCCTTTCAATTGTGTCCATTTATCTGACTATTTGTAACTTGCATCATTTTCTCTAAATGGATAATGCAGCCCAAATC AGCCTCTTTACTGATTAAGTTGATATGTGCCAGACTACTCGAATGCAAGTATATGGGATTTATACTGCTTAAAAGTAGCAACTCTTGGATTGGATTGTAA AATTTTGATCGAGAATCCAAAATCATAAACGAAATGTAATTCTTACTTATTTTATTTATTTTAAAATGTAAGAGTCCTTGATATGGGTAACTTCGTATTT CTACAATAACATCCAGATCTTGTGGGGCAGGTTGATGCCACTCAAAGTTTATCTTCACACTAATCAATGTGCCTCTAATATTATTGTGCTTGCCTAGGTG AAAGTTATGCAGTAAACCTGTAGAAAATGGGCTACTGGTATGTTGAAGTGGATAGCGCTGATTTAATGGCCGTGTTAAGAGTTTTATATGTGGAAGTTGA CGAGTGAAATAATGTAAAAAATATATATTATACTCTCAGTTACCTGTAATTGCCAGACAGTTCTATTGTTGCTTGTCCTTAAAGATGTCAGATATAAATA TGTCAGCAAGCTAATTATCAATGTTCTTGAGGAAGCATTTCAGTTGAAAGAGCATCTTTTGGCACTGCGACGATATCATTTTATGGAGTTAGCAGATTGG GCAGATTTGTTTATCTTATCTCTCTGGCATCATAACTGGTCTGTTACTGAAGCAAACGAGAGACTTTCAGAAATTCAAGGTCTACTTGAGTTGTCAATAC AGAAATCTTCTTGTGAACAAGACCCTAATAAGGAAAGGTTGTTTGTGTACATGAAAGGAAATGGGAAATTGCCTCTTTCCACATCTGCTATCGGGGTCCG TTCTTTTGAATTCCTAGGACTGGGTTACCGTCTGGATTGGCCACTCAGTATTGTTTTAACGCCTGCTGCATTAAAAATATATGCTGATATATTCAGCTTT TTAATACAAGTGAAGCTTGCAATTTTTTCATTGACAGATGTATGGTGCTCATTAAAGGATTTGGTGCATACAACTGATAAGTATCTGAATTCTGAACTGC AGCAGCGTGAGGCTGGGCACCTTAATATGTTGATGAAGATGAGGCACCAGATCAACCATTTTGTATCTACTTTGCAGCAGTATGTAGAGTCACACTTATC TCATGTGTCATGGTGCAGGTTTCTTCATTCCCTTCAGTATAAGGTTTGAAGTCAAATGTTTCTTTTTTGAAATTCTGACCCCTGTTTATACTAGGAATTA AGCTTGACACTAACCTCTATTAGATTACCATGACCCCACAATATAATTTTAAAATAATCCGACATATTCCTGAACAAATAGAAGCTTAATAAATTTGTAT AGAACTCTTAAGATTGCTTCCTCAATTACAGTACTAAATGATTACACAATTGCATTATAAAAAGCGAACTCAGTAAATTTGGATGGTCATTTTTTCTACC TCACTCATTTGTCATTTTCATAGCTCCTAGTTTATAGTAACCTAGGTAAAACCTGTATGACTTTGTAATTCAGTTTTCATATGATTGTTTTGGATCTTTC GGTCATTCATGCAGGTGAAAGATATGATGGATCTCGAGTCAGTGCACATGGAATATCTCGCTGATTCGTTATGCATATGTTTCTTGTCTGATGAAACAA BLAST |
| Tissue | pods |
| Gene name | LI_gene_175064; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_278863
| Blastp | Spindle pole body component alp4 from Schizosaccharomyces with 23.14% of identity |
|---|---|
| Blastx | Gamma-tubulin complex component 6 from Mus with 28.71% of identity |
| Eggnog | - |
| Kegg | Link to kegg annotations (SPBC365.15) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019423114.1) |
| Pfam | Spc97 / Spc98 family (PF04130.12) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |