| Id Trinity | TRINITY_DN50163_c0_g1_i15 |
|---|---|
| Name Transcript | Ll_transcript_279980 |
| Sequence | AAAAAACTAAATTTAAGAAAAATATCTGAAAATAAAGGGTTTTAGTGATTAGCAATAATTACATATCCACAACAATAGTTTTGGAACAGACAGAGGAGAG AGAAACAGAGAAAGAACTAGCTTTTTATTCTTTTCTCTTTGTTTCCAATGGCTCAACCATCTGGTTCGTAATTTCATTTCTCAATTTCAATCACTGTGAA AAATTTAATTTTTTTTAGGTTTTATATGATTTTTATTGTTTACCCCCAATTTTGTAGATTAGGGTATACCCTTCTTCTTTTTTTCGCTTTTGTTCTTCGA TTTTATGCCTGGTTGTTGTCAATTACATGTTTTCCTTTTTTATTTTATTCATATATGTTTAAATTGGAATAACTGTTTTCTGAATTTGAGTTTTTTTTCT TCATTTTTGTGAGTTGATTCATGGTTCAATTTTATCTTAATTTATGGTCACTAAATTGTTAGTATCGAAGGTTTTTTATTTTTGAATTTTCATTAGGCCA ATTCTATGTTATCTGCTCATTTTCCAAAACCCTAAAACAGCTTAACTTTACTTATGCATGTACATGGCATAGCTAGAACAATGATTTATTTATGGGGATA ATTTAAAGAATTTATTTTGTTGAAGAAATTATGTGAAAAACTTGACCTTTTAGAATTTTGAGGTAGATATCATATAGCTATTGGGTATTGCATCAGGAAA GTTTTTGTTCTACATCAATTTATGGGGTGTACCGGTGTACGAGTAAGAAGATATAGGGAAAGTGATTTAGGAAGGGGTGTGAAAGGAGAGATTAAGGTGT GAAAAAGTCATAAGAATATAATAGTTGATTTCATGAGCACATACCTTATCTAAAATCTCGTATTCAATGTGAACTTTGTACTCTTATTTCTATATACCAG TGATGATAGCATAAGAAGCACTCAGTATATGAGAGTTGAACCTTAACGAGTACACTTCATTTATCCAAGACTTTGTTTGTCATCATATTTTTTATAGCGT AACTGAATTTGGGTTGCAGCGAGTCCTCCACCAAAACCATGGGAGCAAGCAGGTTCCTCATCTGGCCCAGCACCTTTTAAACCCCCATCCGCTGGCGCCA CGAGTGATGTAGTTGAAGCTTCGGGGACTGCAAGACCTGGGGAAATTGTTTCTAGTGCTGATAGGGATCCAGCAACTGCCAATAGGAATGCTTTAGGGAG GCCTGTTCCCACAAGGCCATGGGAGAATAGTTATGGAAATAGCAGCTATGGAGGTTATGGTTCTACCATGAATTATAATTCTGGAACTGGAATGTATGGT TCTTCTTACGGCGGTATAGGAGGATCTTCTTATGGCGGGTTAGGAGGAGGTCTGAATTAGTTACTAGTTACTCCCATCAAAGGCGATTCCAAGATTTTTC TTTTACCAACTGCTGCATTTGTTAGACACACGCACAACACACAAATACACCTGATCCATCCTTGGGTCAACTATAGATGAAGGAAGAAGAGGAGAAGGAG AAGATGATGAAGACTGTGGACCTTGATGATATTGAATCAACTTCTCCCAAATCATCCCATGCTTTTCATTTTGAGTCTCAGTCAACCCTTAATCACACTC ACAATTCCTCTTTCTTCAACATCAGGACCGTCTATATTGTCTTCATTAAACCCAAGATCAATGTCTTACTCCCCTTTGGTCCTGTCGCTATCTTACTCCA TTATCTCACTCCAAAACATCATAATGGATGGGTCTTCTTCTTCAGCTTACTCGGTATTGCTCCTCTGGCTGAACGTCTCGGTTATGCTACTGAACAGCTT GCTTTCTACACTGGACCAACAGTTGGAGGTCTCCTAAATGCAACATTCGGCAATGCAACTGAAATGATTATATCAATTTATGCATTGAAAAACGGTATGA TTAGGGTTGTTCAGCAATCTTTACTCGGTTCGATTTTGTCAAATATGCTTCTAGTTCTTGGATGTGCTTTCTTCACTGGTGGGATTGTCCACCACAACAA AGTTCAGGTTTTTAATAAGGTAAATCTTATCTCATCATCACATTCAAATTATTCTATCTCATTCTTTCATTCCTCCTATTGTCACACCATTTACGTTTGC ATTTCCTAAAATCAAACCGCAATTAAAACATGCAAGTAAAATAGAAAAGTCGCGATGCAACAGGCAGCTGCTGTTGTCAATTCTGGCTTGCTCTTGATGG CTGTCATGGGATTACTCTTTCCTGCCGTGCTTCACTTTACTCACTCCGAGCTTCATTTTGGGAAGTCAGTCTTATCTTTATCAAGATTCAGCAGCTGTAT AATGCTACTGGCTTATGCCAGCTACCTTTTCTTTCAACTCAGAAGTCAGCAAAATCTTTATAGTCCTGTTCATGAGGTAGCAGATAATAGTGAAATTTCT GACGAGGAGGAAGAACTTGAATTAACTAAATGGGAAGCCATAGTCTGGCTTGCTATTTTGACTGCATGGGTATCTGTATTGTCTGGGTACCTTGTAGATG CCATAGAGGGAGCATCCGAGTCATTGAATATGTCAATGGCCTTTATTAGTGTCATCTTGCTTCCGATTGTGGGAAATGCTGCTGAGCATGCAAGCGCTAT TATGTTTGCCATGAAGGACAAGCTTGATATCACAATTGGAGTTGCTGTTGGATCATCTACGCAGATATCTATGTTTGTGATCCCCTTCTGTGTGGTTGTT GGATGGTGCATGGGAAAAGAAATGGACTTGAATTTTCAACTCTTCGAGACTACCACACTTTTTATCACTGTGCTGGTGGTTGCATTTATGATGCAGGTAT TTGATTCTTTTTTTCCCCTTAGGAGTTGTTTTATTAGAGGTTGTAAGTGTTAGCCAACTTTGAGTCATTTATGTTTGGAAGCTAGTTCTCTTCTAAAGTT GTGTTGTCAAGCCAAAAATTCAAAGTTTAGTTTTTCACAACGGGGTATTTTAAACTTATGTCTCTCGTTCAGTTTGGTTACGGTTGAAGATATGGTTTAG TCATTACATGATCTTATATCGCATTCTCTTCATCTGAATGACTACGTTGTATTTAGAGTTGCATTTTTCTTTGTACCACTATTATTTTATGTTTATGAAC TGATTTGTGTATAGAGTTGCATTTTCCTTGTTCTCACTGCCGTTTATATTTATGGCAATCATCTTTAAATTTCATTTTATCCCTGCAGGAAGGAACGTCA AATTATTTCAAAGGCTTGATGCTTATTCTGTGCTATCTTATAGTTGCTGCCAGTTTTTTTGTACATGTAGACCCTCAAAATGGTGAGTTTACTGAGAATA TACTTCATAGGTTTATAATAGATTATATAATGTGGCAGAAAGCTTGTTGAATATCCCTCAATTCTTTCTTAACTCTTTGCTAAGTGAACTTCCAAACTGC AACCATGTCTAGTGTGTTGTTCATCGTGTGATGTACTCATCTATCTCTTTCCCTATTGCCTCTGAATATATGCGTATATCTTATGTTGAATGGTATGAAC TTAAGGACATTAGAGTTTGACCCTTCTGGAATCATTATTAACCACCTTTTTGTAGTTATTATTATTTGCACAAGGCCATCCAAGTGGAATTTTGTGGAGA GTCTTAACAGTCTTATGTCATGACTAGAGTCTTAACACCACTAATCCTTAGTCTTACGCAAGAAGAGAAAATCTTAAGAGTCAGCAACTGTAAATACCCT AATACGGTAGACCAAAAGTGGAATCGGTAGTGTCACATGTCAATTGGTTAATAAACACACAATAATTAGGCAAAAGAAGTAATTGATGACTTTAAAGTAA CATAAACATAGGACTTGCTTAATCCTGTGCTTGTGGAATGTGGTGCAGATGATGACTAAATATACAAGGTGATGTGCTGTGGTTCCTTTCTTTTTACCAC TATGGATAGTCAGACAGAAAGGTAGTAAGCATTTTGCTTGAATGGGGTGCTGCATTCAACAAACATGGCCCCTAAGTGATCAAACGAGCAATGAATATAC CATGCTGACAATTATCAGCTCTGTATTATGTTGAATTTTGAAAGGACGGATGGGTTATTATGTATGTTAATTATTATCTTAATCTCCATAGTTATCATTC ATTTACCATAAATCTTATTGTTGTCCCCTCCAATGAATTACGGTGAAGACAACCAATCATCGTGATTAACCCCTTTATTCTTTTGCAGCTTTTATTTAGT GCTATAACTTGTTTTACCAACGGAGATGTGCATGATTACACCTTGAGTGTGATGTTAATTATGTCATACCATTTCAAGATGACAATTGAATTTAGTGGAC TTCAATTGCGGAACATACAGTACGTTGGTTTTTAGCTTTCTTCTTCTTTGATCCTTGACCAGTATAACCCAGAGTCGTGTCTAGTCATCTTGTGTCAGCT ATTAAAAATGAAGACCACACTGTTACTTGTGCAACAAGTATCAGTGATTTGCATCAAGCTCCTCCAAATACAAGGCACCTTAGTTTATCATGTTGCATAA GGTTTCCTAGAGTAGAGGCTTTAATATAGATAGTGGCAGTTTTATATTTACCTTAGTGCCTAGTTAGTTATTTAATTAACTTTCTATATATAGTAGATAG ATTGCTTTGTATCATTTGAATCAAGTTGAATGAAATTCATATTTCCCTCCTTCACAATTTGAATTCCTCTCTTCCTTTGCTCTCACTTGATTCAGAAAAC TTCTTCATCTTCT BLAST |
| Tissue | pods |
| Gene name | LI_gene_175124; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_279980
| Blastp | Vacuolar cation/proton exchanger 5 from Arabidopsis with 73.36% of identity |
|---|---|
| Blastx | Vacuolar cation/proton exchanger 2 from Oryza sativa with 69.13% of identity |
| Eggnog | Calcium Proton(COG0387) |
| Kegg | Link to kegg annotations (AT1G55730) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019436160.1) |
| Pfam | Sodium/calcium exchanger protein (PF01699.23) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |