Ll_transcript_279966

• Id Trinity: TRINITY_DN50163_c0_g1_i2
• Name Transcript: Ll_transcript_279966
• Sequence: AAAAAACTAAATTTAAGAAAAATATCTGAAAATAAAGGGTTTTAGTGATTAGCAATAATTACATATCCACAACAATAGTTTTGGAACAGACAGAGGAGAG AGAAACAGAGAAAGAACTAGCTTTTTATTCTTTTCTCTTTGTTTCCAATGGCTCAACCATCTGGTTCGTAATTTCATTTCTCAATTTCAATCACTGTGAA AAATTTAATTTTTTTTAGGTTTTATATGATTTTTATTGTTTACCCCCAATTTTGTAGATTAGGGTATACCCTTCTTCTTTTTTTCGCTTTTGTTCTTCGA TTTTATGCCTGGTTGTTGTCAATTACATGTTTTCCTTTTTTATTTTATTCATATATGTTTAAATTGGAATAACTGTTTTCTGAATTTGAGTTTTTTTTCT TCATTTTTGTGAGTTGATTCATGGTTCAATTTTATCTTAATTTATGGTCACTAAATTGTTAGTATCGAAGGTTTTTTATTTTTGAATTTTCATTAGGCCA ATTCTATGTTATCTGCTCATTTTCCAAAACCCTAAAACAGCTTAACTTTACTTATGCATGTACATGGCATAGCTAGAACAATGATTTATTTATGGGGATA ATTTAAAGAATTTATTTTGTTGAAGAAATTATGTGAAAAACTTGACCTTTTAGAATTTTGAGGTAGATATCATATAGCTATTGGGTATTGCATCAGGAAA GTTTTTGTTCTACATCAATTTATGGGGTGTACCGGTGTACGAGTAAGAAGATATAGGGAAAGTGATTTAGGAAGGGGTGTGAAAGGAGAGATTAAGGTGT GAAAAAGTCATAAGAATATAATAGTTGATTTCATGAGCACATACCTTATCTAAAATCTCGTATTCAATGTGAACTTTGTACTCTTATTTCTATATACCAG TGATGATAGCATAAGAAGCACTCAGTATATGAGAGTTGAACCTTAACGAGTACACTTCATTTATCCAAGACTTTGTTTGTCATCATATTTTTTATAGCGT AACTGAATTTGGGTTGCAGCGAGTCCTCCACCAAAACCATGGGAGCAAGCAGGTTCCTCATCTGGCCCAGCACCTTTTAAACCCCCATCCGCTGGCGCCA CGAGTGATGTAGTTGAAGCTTCGGGGACTGCAAGACCTGGGGAAATTGTTTCTAGTGCTGATAGGGATCCAGCAACTGCCAATAGGAATGCTTTAGGGAG GCCTGTTCCCACAAGGCCATGGGAGAATAGTTATGGAAATAGCAGCTATGGAGGTTATGGTTCTACCATGAATTATAATTCTGGAACTGGAATGTATGGT TCTTCTTACGGCGGTATAGGAGGATCTTCTTATGGCGGGTTAGGAGGAGGTCTGAATTAGTTACTAGTTACTCCCATCAAAGGCGATTCCAAGATTTTTC TTTTACCAACTGCTGCATTTGTTAGACACACGCACAACACACAAATACACCTGATCCATCCTTGGGTCAACTATAGATGAAGGAAGAAGAGGAGAAGGAG AAGATGATGAAGACTGTGGACCTTGATGATATTGAATCAACTTCTCCCAAATCATCCCATGCTTTTCATTTTGAGTCTCAGTCAACCCTTAATCACACTC ACAATTCCTCTTTCTTCAACATCAGGACCGTCTATATTGTCTTCATTAAACCCAAGATCAATGTCTTACTCCCCTTTGGTCCTGTCGCTATCTTACTCCA TTATCTCACTCCAAAACATCATAATGGATGGGTCTTCTTCTTCAGCTTACTCGGTATTGCTCCTCTGGCTGAACGTCTCGGTTATGCTACTGAACAGCTT GCTTTCTACACTGGACCAACAGTTGGAGGTCTCCTAAATGCAACATTCGGCAATGCAACTGAAATGATTATATCAATTTATGCATTGAAAAACGGTATGA TTAGGGTTGTTCAGCAATCTTTACTCGGTTCGATTTTGTCAAATATGCTTCTAGTTCTTGGATGTGCTTTCTTCACTGGTGGGATTGTCCACCACAACAA ACAACAGGTTTTTAATAAGGCAGCTGCTGTTGTCAATTCTGGGTTGCTGTTGATGGCTGTCATGGGAATACTGTTCCCTGCAGTGCTTCACTTTACTCAT TCTGAACTTCATTTTGGGAAGTCAGTCTTATCTTTATCAAGATTCAGCAGCTGTATAATGCTAGTGGCTTATGCAAGCTACCTTTTCTTTCAACTGAGAA GCCAGCAAAATCTTTATAGTCCTGTTCATGAGATAGTAGATAGTAGTGAAAATTCTGAAGAGGAGGAAGAAATTGAATTAACTAAATGGGAAGCAATTGT ATGGCTTGCTATTTTAACTGCATGGGTATCTGTATTGTCTGGATACCTTGTAGATGCCATAGAGGGAGCATCTGAGTCATTGAATATGTCAATGGCCTTC ATTAGTGTTATCTTGCTTCCAATTGTGGGCAATGCTGCTGAGCATGCAAGCGCTATTATGTTTGCCATGAAGGACAAGCTTGATATCACAATTGGAGTTG CTGTTGGATCATCTACACAGATATCTATGTTTGTGATCCCTTTCTGTGTGGTTGTTGGATGGTGCATGGGAAAAGAAATGGACTTGAATTTTCAACTCTT TGAGACTGCCACACTTTTTATCACTGTGCTGGTAGTTGCATTTATGATGCAGGAAGGAACATCTAATTATTTCAAAGGCTTGATGCTTATTCTATGCTAT CTTATAGTGGCTGCCAGTTTTTTTGTACATGTAGACCCTCAAAATGATGTTGACTAAAATATATACATGGTGCTGTCCTGTGGTTCCTTTCTTTTTTCCA CTGCGGATTGTCACACAGAAAGGTAGGAAGCAGTGTGCTTGAATGAATTAATGGGTTCAAGAAAATTGTACTTCAACCTGCTGCATTCAACAAACATGGC CCGGGAGTGATCACACGAACAATGATGAATGTATTATGCTGACAATTATCAGCGGTTTATTATATCGAATTTTAATATCCATAGTTGTCATTCATTTACG GTAAATCTTCTTATCTCTTCCAATGAATCACGTTGAAGACATCCAAACACTGTGATTCCTTCCCTCCTTTTCTCTTTTGCTGCTTCTAGTTCTGTAACTT ATTACCCACAGAGATGACAACTGAATTCAGTAAAGTTCTGCATGCGTGTGTTAGAATCGTCCTAAAAAATTTGGAATTTTAATACAGTATGTTCGTTTTC TGTTTTTATTTTTTCTCTTCATATTTGACAAGTATGGTATATGACCTATGCCTGACAAACAATTTTGGACTTATTTTATATCAATCTTCATTGTGTTTAG GCTCCCAACACTTTACATAGGTTGAAAAGTGATCAAATGTAATTAGATGAATTGTCAAATAAGATATAGTTCTCCCC
• Tissue: pods
• Gene name: LI_gene_175124;
• Additional information: details;

Expression of Ll_transcript_279966

FPKM

• PAB: 2.5
• PNAB: 4.9
• PS1: 4.5
• PS2: 3.3
• PS3: 3.4
• PW1: 4.8
• PW2: 4.2
• PW3: 3.5

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_279966

• Blastp: Vacuolar cation/proton exchanger 2 from Oryza sativa with 74.64% of identity
• Blastx: Vacuolar cation/proton exchanger 2 from Oryza sativa with 79.79% of identity
• Eggnog: Calcium Proton(COG0387)
• Kegg: Link to kegg annotations (4333044)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019436159.1)
• Pfam: Sodium/calcium exchanger protein (PF01699.23)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;