Ll_transcript_279970

• Id Trinity: TRINITY_DN50163_c0_g1_i6
• Name Transcript: Ll_transcript_279970
• Sequence: AAAAAACTAAATTTAAGAAAAATATCTGAAAATAAAGGGTTTTAGTGATTAGCAATAATTACATATCCACAACAATAGTTTTGGAACAGACAGAGGAGAG AGAAACAGAGAAAGAACTAGCTTTTTATTCTTTTCTCTTTGTTTCCAATGGCTCAACCATCTGGTTCGTAATTTCATTTCTCAATTTCAATCACTGTGAA AAATTTAATTTTTTTTAGGTTTTATATGATTTTTATTGTTTACCCCCAATTTTGTAGATTAGGGTATACCCTTCTTCTTTTTTTCGCTTTTGTTCTTCGA TTTTATGCCTGGTTGTTGTCAATTACATGTTTTCCTTTTTTATTTTATTCATATATGTTTAAATTGGAATAACTGTTTTCTGAATTTGAGTTTTTTTTCT TCATTTTTGTGAGTTGATTCATGGTTCAATTTTATCTTAATTTATGGTCACTAAATTGTTAGTATCGAAGGTTTTTTATTTTTGAATTTTCATTAGGCCA ATTCTATGTTATCTGCTCATTTTCCAAAACCCTAAAACAGCTTAACTTTACTTATGCATGTACATGGCATAGCTAGAACAATGATTTATTTATGGGGATA ATTTAAAGAATTTATTTTGTTGAAGAAATTATGTGAAAAACTTGACCTTTTAGAATTTTGAGGTAGATATCATATAGCTATTGGGTATTGCATCAGGAAA GTTTTTGTTCTACATCAATTTATGGGGTGTACCGGTGTACGAGTAAGAAGATATAGGGAAAGTGATTTAGGAAGGGGTGTGAAAGGAGAGATTAAGGTGT GAAAAAGTCATAAGAATATAATAGTTGATTTCATGAGCACATACCTTATCTAAAATCTCGTATTCAATGTGAACTTTGTACTCTTATTTCTATATACCAG TGATGATAGCATAAGAAGCACTCAGTATATGAGAGTTGAACCTTAACGAGTACACTTCATTTATCCAAGACTTTGTTTGTCATCATATTTTTTATAGCGT AACTGAATTTGGGTTGCAGCGAGTCCTCCACCAAAACCATGGGAGCAAGCAGGTTCCTCATCTGGCCCAGCACCTTTTAAACCCCCATCCGCTGGCGCCA CGAGTGATGTAGTTGAAGCTTCGGGGACTGCAAGACCTGGGGAAATTGTTTCTAGTGCTGATAGGGATCCAGCAACTGCCAATAGGAATGCTTTAGGGAG GCCTGTTCCCACAAGGCCATGGGAGAATAGTTATGGAAATAGCAGCTATGGAGGTTATGGTTCTACCATGAATTATAATTCTGGAACTGGAATGTATGGT TCTTCTTACGGCGGTATAGGAGGATCTTCTTATGGCGGGTTAGGAGGAGGTCTGAATTAGTTACTAGTTACTCCCATCAAAGGCGATTCCAAGATTTTTC TTTTACCAACTGCTGCATTTGTTAGACACACGCACAACACACAAATACACCTGATCCATCCTTGGGTCAACTATAGATGAAGGAAGAAGAGGAGAAGGAG AAGATGATGAAGACTGTGGACCTTGATGATATTGAATCAACTTCTCCCAAATCATCCCATGCTTTTCATTTTGAGTCTCAGTCAACCCTTAATCACACTC ACAATTCCTCTTTCTTCAACATCAGGACCGTCTATATTGTCTTCATTAAACCCAAGATCAATGTCTTACTCCCCTTTGGTCCTGTCGCTATCTTACTCCA TTATCTCACTCCAAAACATCATAATGGATGGGTCTTCTTCTTCAGCTTACTCGGTATTGCTCCTCTGGCTGAACGTCTCGGTTATGCTACTGAACAGCTT GCTTTCTACACTGGACCAACAGTTGGAGGTCTCCTAAATGCAACATTCGGCAATGCAACTGAAATGATTATATCAATTTATGCATTGAAAAACGGTATGA TTAGGGTTGTTCAGCAATCTTTACTCGGTTCGATTTTGTCAAATATGCTTCTAGTTCTTGGATGTGCTTTCTTCACTGGTGGGATTGTCCACCACAACAA ACAACAGGTTTTTAATAAGGTATATGTATCATCTCCTGTCCTGCTTGAAATTACTATTGTATGTGATAGTTGAAATTTAGACTCTAGTTCTTCTTTGCAA TAGGCAGCTGCTGTTGTCAATTCTGGGTTGCTGTTGATGGCTGTCATGGGAATACTGTTCCCTGCAGTGCTTCACTTTACTCATTCTGAACTTCATTTTG GGAAGTCAGTCTTATCTTTATCAAGATTCAGCAGCTGTATAATGCTAGTGGCTTATGCAAGCTACCTTTTCTTTCAACTGAGAAGCCAGCAAAATCTTTA TAGTCCTGTTCATGAGATAGTAGATAGTAGTGAAAATTCTGAAGAGGAGGAAGAAATTGAATTAACTAAATGGGAAGCAATTGTATGGCTTGCTATTTTA ACTGCATGGGTATCTGTATTGTCTGGATACCTTGTAGATGCCATAGAGGGAGCATCTGAGTCATTGAATATGTCAATGGCCTTCATTAGTGTTATCTTGC TTCCAATTGTGGGCAATGCTGCTGAGCATGCAAGCGCTATTATGTTTGCCATGAAGGACAAGCTTGATATCACAATTGGAGTTGCTGTTGGATCATCTAC ACAGATATCTATGTTTGTGATCCCTTTCTGTGTGGTTGTTGGATGGTGCATGGGAAAAGAAATGGACTTGAATTTTCAACTCTTTGAGACTGCCACACTT TTTATCACTGTGCTGGTAGTTGCATTTATGATGCAGGAAGGAACATCTAATTATTTCAAAGGCTTGATGCTTATTCTATGCTATCTTATAGTGGCTGCCA GTTTTTTTGTACATGTAGACCCTCAAAATGATGTTGACTAAAATATATACATGGTGCTGTCCTGTGGTTCCTTTCTTTTTTCCACTGCGGATTGTCACAC AGAAAGGTAGGAAGCAGTGTGCTTGAATGAATTAATGGGTTCAAGAAAATTGTACTTCAACCTGCTGCATTCAACAAACATGGCCCGGGAGTGATCACAC GAACAATGATGAATGTATTATGCTGACAATTATCAGCGGTTTATTATATCGAATTTTAATATCCATAGTTGTCATTCATTTACGGTAAATCTTCTTATCT CTTCCAATGAATCACGTTGAAGACATCCAAACACTGTGATTCCTTCCCTCCTTTTCTCTTTTGCTGCTTCTAGTTCTGTAACTTATTACCCACAGAGATG ACAACTGAATTCAGTAAAGTTCTGCATGCGTGTGTTAGAATCGTCCTAAAAAATTTGGAATTTTAATACAGTATGTTCGTTTTCTGTTTTTATTTTTTCT CTTCATATTTGACAAGTATGGTATATGACCTATGCCTGACAAACAATTTTGGACTTATTTTATATCAATCTTCATTGTGTTTAGGCTCCCAACACTTTAC ATAGGTTGAAAAGTGATCAAATGTAATTAGATGAATTGTCAAATAAGATATAGTTCTCCCC
• Tissue: pods
• Gene name: LI_gene_175124;
• Additional information: details;

Expression of Ll_transcript_279970

FPKM

• PAB: 0.2
• PNAB: 0.4
• PS1: 0.6
• PS2: 0.2
• PS3: 0.7
• PW1: 0.6
• PW2: 0.8
• PW3: 0.1

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_279970

• Blastp: Vacuolar cation/proton exchanger 2 from Oryza sativa with 80.6% of identity
• Blastx: Vacuolar cation/proton exchanger 2 from Oryza sativa with 73.76% of identity
• Eggnog: Calcium Proton(COG0387)
• Kegg: Link to kegg annotations (4333044)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019436159.1)
• Pfam: Sodium/calcium exchanger protein (PF01699.23)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;