| Id Trinity | TRINITY_DN50166_c0_g4_i3 |
|---|---|
| Name Transcript | Ll_transcript_280224 |
| Sequence | ATGTTGGGACTTGCATTGCTAAATCGAGAGGAATATGCCAAGGGAATCAGAGAGTTGCAGAAGGTCTGTATTGTAAACCTGTTTTATGTGCTTCCTGATA TTTGTTACTTAGTTATATTTGTTTCAAGAATTTATTTATGCTTCATATGAGGATTTGCCCTTTTGTTACTGTAGAAGTATTTAACTTGTATGATGTTTTT GCATTTAGTGGTAGATGAATTTTTATCTGATGATGTGTTAAAACTCATGGATCCGGGTCAATGCAGTTGAAATGAAATGTTGATGACTATATTTGTCTGA CAACATTTTGGAGTTGCAGAATTTTTTGATAAATATAATAGTGTGCTGTGTAGGTTTTCATAATAGAGGAGAGGTATGTTATGTGTATGTAGTGAATGCA AAAATTTACTCTAAACACTAAATTGTAATATTCAATTCATAGAACAGCTAGGTTGGTTAACTTATCTGATTTGTAAACCAAAGCATGGATTTTAATTTAG CATTAGCATGATTCGGAAAAGAATGAAATGTTGATTCCTGTTGCCTCTTTGTGATAGGTATACTATCATTTTAGTCTCCATGGGTAATATGTTGTGTGGT TCTGAATAGATATAAGAAGACCAGACATGTTGTCTCTCAGTACTTTTACTGGATGCTTGTGGTCATAATTGTTCTGAGTGTCAAATTTGGTGTTGTGGAC CTATAAAGACGTCCTCGACAAAGAAAGGAAGGAAAAATGGGCTAGCGGACTTTTCGGTCTGTGTTTACTCCCTTATTTAATTTTGTGAGAATGGGTGGTT AAGTGGATGATTTCGTATTTTGACCAGTCCTTTCTAACATACAAGAAATTCTTAAACCATAAATTTCGGAGATTGAGAATGTATCTAGTTTGGCATTTTC GTGGTTTGTCTTTCACTCCTTTGAGATCCAATATTCCACTCCACCCCTACTTATACATCAGCGCATAAGAGGAATATGGCTAAACAAACGGGACAGAAGT AATGCAGCGTACCGACATTTATGCGAGGACAGATCGACACTCAATGTTTAGCCAGTACCCCGCTTGAGTTGTTTCCCTCTGCATGTGCTTCTTCCTTTCT TTTTGCATTTCATTTCTCAGCTTCCTTGTCATTATTTATGTTGCGGATGTTTTCACATTTTTTATAGATGACCCGAAGATGCAAATTGGCCGAGAATATT GTCAATTTGCCATACTATCAGCTGTTAAGGGACATGGTGCTTCCTTCGTTTAAATTTAATATCTACAATAGGAACAAATCCCTTTCCCCACTTCGTGGGG TCAGCTATATATTTGTATCAAATGGTGTCATTGTGTTATTATTGAGGCTTTCCGTGATCATCTCCTCTAATGGCCAAACCACGCTACGGCTATTTTCTCT CCGATGTTTTCTTTACTAATCCCATCTTGTCTTGTATGTATATTCATATTATGCAACTTTCTAGTGTTTGCTGCACTGAGCTTATGCTTTTCTTGGCTTT TTACTGCCCTAGCATTCGGTTCCAAGGTTTTATAATTGTGCGGAAGAAAATTCTTTTTAATCTTGAGAATCACTTTTTTAATCATGGATAATGTTGGAGT AGCGTTTCTTCATTTTATCCGCCTAGCTTGAATCTGATAGTTCCCGGTTTGAGAAGCATTTTTTAATTTAATGTCAGATTGCCTAGATAACTTCTCTGAT GATTTACTATGTGATTGTTGAGATATTAACAATGGGTTTCCCCGATTTTTTAAATGAGAGATGATTCTTATATTTGTTGTGGTCATAATGAAGGCTTTGG ATCTTGGAAGAGGTGCCGATCCCAAGGGATATATGGTAGAAGAAATATGGCAAGAGCTTGCAAAAGCAAAATACCTAGAGTGGGAACGTTCATCGTCCAA GCGATCCTGGGAATTGCAGAGCTTAAAAGAAGTTTGTGAGTCTGCTCTAAAGGAAAAACATTTTCTTGATGTGCCGGAAATGGAAGGATTTGTAGAGGTT ACCCCTACCCATATGGAAGAATTAGAGGCTTTAGGAAAGGTCTTCAATAAAGCTGCAGAGGATGATATACCAACTGAGATACCAGATTATCTCTGCTGCA AAATTACACTTGATATTTTTCATGATCCGGTAATCACTCCGAGCGGACATACATATGAGAGGGCAGTGATTATTGAGCATCTGAAGAAGGTTGGTAAGTT TGACCCCTTCACGCGACAACCACTTCAACTATCGCAGCTAGTACCGAACTTGGCTATTAAAGAAGCGGTGCAGGCATTTTTGGACAAACATGGCTGGGCC TACAAGGTAGATTAATTTACAAGTTAACAAATGCAGTAGGATGCTGTATTTCGTAAATGAGGCCGTAAGTGAGGCCGTGTTCGGTAACTCGTTAATTATG TTTTCCCCTGCATTGTTTTGATTTTGGACATGAGTCCTTATTATGAAGTGTACATATTGTTTTCATTGTCCTAAGTAAATAGTTGTCTACTCCATTATGT GATGCTGTGTATAGAAAATGCAATGCTGCTAAAGAGAGTTTGGAAATGATTAGTAAGAAATGTATTCACACACATTAGACAAATCATTATGCTAACTTGG CTTCTCTATCAGATTAAGATATAAGGTTAGTTGTTGAATGTTAAGCACTTTGGTTGTGAAGTATGAATTGGAATATTCATGTTATGCAGAAAAATTAATT ACTTTTGTAATGGACAAAAA BLAST |
| Tissue | pods |
| Gene name | LI_gene_175145; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_280224
| Blastp | E3 ubiquitin-protein ligase CHIP from Arabidopsis with 64.2% of identity |
|---|---|
| Blastx | E3 ubiquitin-protein ligase CHIP from Arabidopsis with 64.2% of identity |
| Eggnog | STIP1 homology and U-box containing protein 1, E3 ubiquitin protein ligase(ENOG410ZC2R) |
| Kegg | Link to kegg annotations (AT3G07370) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019463760.1) |
| Pfam | U-box domain (PF04564.14) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |