Ll_transcript_279548

• Id Trinity: TRINITY_DN50175_c0_g1_i4
• Name Transcript: Ll_transcript_279548
• Sequence: GCCCCATCATCACTGCTCCGACCCGACCCGCTTTCTTTCAACATACCACTATATTTCACTTGCAAAGCGGTGATAACGGTTTTCAAGGCCCGGCTCGGCG AGTTCCGGTTAGATATCATAATCTCACCCACTTCGGCCGGGCTGAGCCGAGGCCCGGTCTGAGAAAAAACCTCTTCAACCTGAGGGAAAAGCTTATGTTC CTTCAACCCTAAGTAGCTACTTGCTAAAATCTTGAACGTTGAGAAATCACATAAGGGAAAGTGTATATGAACATCAACTCTTCCAGGTCTCAAAACTGCT TCATCTACCTCATCTTTTGAACCGTTCATTGTGAAAACCATCACGCGCTCTTCTCCGCAACATGAAACGACGCCGTCCATGAAATTCAACACGCTAGATA AACTGACATTTACGGCCGTTGATTTCGATGATAATAAACGGTCGAGATCCTCGATCACGATCATTGACTTACTCGTTGTTTGCATCAGAAGCGTTTTCCA ATCATAACCGTTCGTTACTTTCGAGTTATCGATGTCGTAAACGTCGTAGTTTAGGAACTTCGCCATTGCTGCAATGAAACTTGATTTTCCGGTACCTGAA GAACCGTAGAGAAGATAGCTTCGCTTCCAAACACGTCCTAATCGGTGATAATAGTGTTTCGATTTCAGAAACTGTTCAAGATCGGATTTCACCTTGTTTT TCAAATCCGTGTCCATCACCACCGTTTCGAAGCTCGCTGGATGGTTAAACGGCACCGACCGCCATCGAGAGTTTTCGCCGCCGCCGGTGTTAACAAACAG TTTGATTTCCTTCCGACGTTGTTCTATCTCATCCGCTACTGAGAGAACATGCTGGAAGTACTGTAAGAAAATCCTGCGCTTGTCTTTCTTCTTTATCCGG AGCACAAGCGCGGCGGAATCGGAGTCGCCGCCGCCGGTTGATACAGCGTGTTTAGCCCACCGGAGCTTTGCGCCGAGGAAGGTATCTTCGACGACTTGGT TTGCACCGAGTTGGAAGAAAATATCGGAGGGGTTGTTACCGGAGAAGAGGTTGGTGAAATCGGAATCCTGAACGGAAGTGAGAGAATCGAGGTTGCTCAT GTGATTTCAAAACCAAGGTGATACTTTACAGGGAATGATACATCATTCCCAAGTTGTCTTAATCAACCAGGTACGTAATTTGTGGTAATATACCAACCAT ATATTATGTTCAATATTTTTTTAAGATCAATATTATGTTTTCTTTTTAAATTTTTGCTAGTATCTAAATGCATGTTTGATTACTTTTTTATGTGAGCATA ATTTGATGTTAAGTTCACAATAGAGAGCTACATATTAGGTAAAACAGTACTTTTAATTGTTAAATTCATATCAGTGAGCTGTGAGCTAGCACTTTTGGAA AAATGGAGTGGGCTGGAAATCAATTTGTGAACCGTAGAATATATGTATTGGAAATTATGATGGAGTAATAAGTAACTTTTAATTCAAATCGGTATGAGAT AAATATATGTATTTACATTGTGTTGGATATTTCAAGTGTGAATGAAGAAGTATCATACTGTGCAAAAGTGAATAAATTAAAGAAAATATAAGTGGATGAC CCCATAGACCTAATGCTTTAAGGTTTTGGGTCAAGATGTGGTGTTAAACTCATTATATACTTCTTTCACTTTGCCTATGAAGGAATGTTATAGTCCATGG ATGAAGATCTCCCACATATGGTATCACAGCCGATGGTTCGACTGGTACAATGGAGAATTGAAGCCACAAGTGATCGGTAGATCTATGAGGTATCCTTGTG TCGAAAGTCTTCCTGACGAGAGGTCAAGGCGACTTGTTTTGAAGAAAGGATAAGTCAGACGGTGCAAGTAGATAAAGACCTGAGCTATGGTGTATCAAAC ACTTGAGGGGAAGATTGTTCTGTATTCTAAGTGTGAATGAGGAAGTTTCGTATTATGCAAAAGTTGATTAGTTAAAGAGCATATAAGTGGATGAACCCAT GAACTTAATAGATGTGGTGTGAAACTCATTATATTCTTTTTTCACTTAGTTCATTAAGGAATGTTATAGCTCATGAATAAAGATCTCCCAACATTTATAT TTAATTGTATCATGCATTTATATACTCAATGTATGGATTTTGTGTTAACATCTTACTGTATATGGTTATGGATAATATCAAATTATGAGGATAC
• Tissue: pods
• Gene name: LI_gene_175203;
• Additional information: -

Expression of Ll_transcript_279548

FPKM

• PAB: 0.3
• PNAB: 0
• PS1: 0
• PS2: 0
• PS3: 0.3
• PW1: 0
• PW2: 0
• PW3: 0.3

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_279548

• Blastp: AAA-ATPase At2g46620 from Arabidopsis with 60.05% of identity
• Blastx: AAA-ATPase At2g46620 from Arabidopsis with 60.05% of identity
• Eggnog: Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins (By similarity)(COG0465)
• Kegg: Link to kegg annotations (AT2G46620)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019414918.1)
• Pfam: ATPase family associated with various cellular activities (AAA) (PF00004.28)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;