Ll_transcript_279550

• Id Trinity: TRINITY_DN50175_c0_g1_i6
• Name Transcript: Ll_transcript_279550
• Sequence: GCCCCATCATCACTGCTCCGACCCGACCCGCTTTCTTTCAACATACCACTATATTTCACTTGCAAAGCGGTGATAACGGTTTTCAAGGCCCGGCTCGGCG AGTTCCGGTTAGATATCATAATCTCACCCACTTCGGCCGGGCTGAGCCGAGGCCCGGTCTGAGAAAAAACCTCTTCAACCTGAGGGAAAAGCTTATGTTC CTTCAACCCTAAGTAGCTACTTGCTAAAATCTTGAACGTTGAGAAATCACATAAGGGAAAGTGTATATGAACATCAACTCTTCCAGGTCTCAAAACTGCT TCATCTACCTCATCTTTTGAACCGTTCATTGTGAAAACCATCACGCGCTCTTCTCCGCAACATGAAACGACGCCGTCCATGAAATTCAACACGCTAGATA AACTGACATTTACGGCCGTTGATTTCGATGATAATAAACGGTCGAGATCCTCGATCACGATCATTGACTTACTCGTTGTTTGCATCAGAAGCGTTTTCCA ATCATAACCGTTCGTTACTTTCGAGTTATCGATGTCGTAAACGTCGTAGTTTAGGAACTTCGCCATTGCTGCAATGAAACTTGATTTTCCGGTACCTGAA GAACCGTAGAGAAGATAGCTTCGCTTCCAAACACGTCCTAATCGGTGATAATAGTGTTTCGATTTCAGAAACTGTTCAAGATCGGATTTCACCTTGTTTT TCAAATCCGTGTCCATCACCACCGTTTCGAAGCTCGCTGGATGGTTAAACGGCACCGACCGCCATCGAGAGTTTTCGCCGCCGCCGGTGTTAACAAACAG TTTGATTTCCTTCCGACGTTGTTCTATCTCATCCGCTACTGAGAGAACATGCTGGAAGTACTGTAAGAAAATCCTGCGCTTGTCTTTCTTCTTTATCCGG AGCACAAGCGCGGCGGAATCGGAGTCGCCGCCGCCGGTTGATACAGCGTGTTTAGCCCACCGGAGCTTTGCGCCGAGGAAGGTATCTTCGACGACTTGGT TTGCACCGAGTTGGAAGAAAATATCGGAGGGGTTGTTACCGGAGAAGAGGTTGGTGAAATCGGAATCCTGAACGGAAGTGAGAGAATCGAGGTATGTGAT GATTTTCCGGTAAAGTTGATTTTCCTGAAAATTTTGATTGTAGAGTGGGACTTTGAAGGATTGGTACACGTGGAAGCGGTTTTCAAAGGAGAACCACCAT TTGTTGAGGATGTGAAGTGTTGAGGTTTTTCGGAAGAAACAAAGAATTAGGAAAGAGAAAACTAAGATGAAGAAAATTGGGAAAAATAACCAAATCATGT TTGATTATTTGGTTGAATTTGAAAGATGAAATTATTATAAGCTAAGATTGGAAAAATGAATAATCATGCAAGTATATGGGTTGGAATAACTGGGGAATGT TGATGTTAATGAAGCTTTTGATGTATTATTCAACTTTGAAGAGGTCATTGCTACCTAAGGTCAGTGCCTGCAAATTTAATACTTCAAAGAAATAATTATT ATAATTGCACCGTGTGTTCTTCGTTGGTGTTTAATTTTCAAGATATTTGACCTTTGTATTTCATTCTTCGCTGAAATTTCATAATATTCGGATATCCTTT TTTCTCTATATCTGTTGGCTGGATCAATTTTTATAGGTTTTTATTACTTATTTTTAAGTTTTGTTGGCATATCTTGTTAAATTGTTAATATCTAATGATT GATGATGCATAATGATAGGTTGCTCATGTGATTTCAAAACCAAGGTGATACTTTACAGGGAATGATACATCATTCCCAAGTTGTCTTAATCAACCAGGAA TGTTATAGTCCATGGATGAAGATCTCCCACATATGGTATCACAGCCGATGGTTCGACTGGTACAATGGAGAATTGAAGCCACAAGTGATCGGTAGATCTA TGAGGTATCCTTGTGTCGAAAGTCTTCCTGACGAGAGGTCAAGGCGACTTGTTTTGAAGAAAGGATAAGTCAGACGGTGCAAGTAGATAAAGACCTGAGC TATGGTGTATCAAACACTTGAGGGGAAGATTGTTCTGTATTCTAAGTGTGAATGAGGAAGTTTCGTATTATGCAAAAGTTGATTAGTTAAAGAGCATATA AGTGGATGAACCCATGAACTTAATAGATGTGGTGTGAAACTCATTATATTCTTTTTTCACTTAGTTCATTAAGGAATGTTATAGCTCATGAATAAAGATC TCCCAACATTTATATTTAATTGTATCATGCATTTATATACTCAATGTATGGATTTTGTGTTAACATCTTACTGTATATGGTTATGGATAATATCAAATTA TGAGGATAC
• Tissue: pods
• Gene name: LI_gene_175203;
• Additional information: -

Expression of Ll_transcript_279550

FPKM

• PAB: 0.8
• PNAB: 1.4
• PS1: 2.5
• PS2: 0.4
• PS3: 1
• PW1: 2.1
• PW2: 2.3
• PW3: 1

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_279550

• Blastp: AAA-ATPase At2g46620 from Arabidopsis with 56.25% of identity
• Blastx: AAA-ATPase At2g46620 from Arabidopsis with 58.25% of identity
• Eggnog: Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins (By similarity)(COG0465)
• Kegg: Link to kegg annotations (AT2G46620)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019414918.1)
• Pfam: Domain associated at C-terminal with AAA (PF14363.5)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;