Ll_transcript_279862

• Id Trinity: TRINITY_DN50198_c4_g4_i1
• Name Transcript: Ll_transcript_279862
• Sequence: CTTCTAAGGCATTTGAGTTTTTTTGCCAAATTGAGTTTCTACATGATTAATGAAGTGAACCAGATGAGACCTAGTCTCAGCCTTGGTTTTTAGGAGAATG ATCCAGGTAAATCTTGAGTGATCATCAACAAGAGTTAAGAAATATTTATGGCCATATATAGAACAAGTAGAATAAGGCCCCCATATATCAGCATGCAATA TATCAAAACAGTCAGAGGACACAGAATTGCTATGAGTAAAGGGCAATTTTCTTTGCTTTGCAGTATGGCATACATCACAAGGAGCAATATTATGACTAGT ATGTATAAAAGGGAAATTTTTCTTAAGCTGCATTAAAACAGAGACAGGGGAATGCCCAAGTCTAAGGTGCCACAAGCAATCATTGTTTACAGATTTAGAG GTTGTCTCAGCATTAACATAGTGTCCTACAAAGTGTCTAGAACTGTCTAAGTCTATAAAAAACAAGCCTTGTTGTGGTCTAGCTGAACCAATCATCTTCT TGGTATGGTTCTGCAAAATTAAACACTTATTGTAAGAAAGGATAAAATGGCATTTTAAATCATGCATGAGTTTATTGACTGATAAGAGATTAATATGGAA TTGAGGAACAAAAAGAACATTTGTGAGTACTAAAGAAGGGGTGAGAGTAACTGTACCAGATATTCTTGTGATAACCTTATCACCATTAGGGAGAGTAATG AACATTGGTGCTATAGACTTATAATTTTTAAAATTGTGCACATCATTAGTGATGTGGTCTGTGGCACCAGTGTCCATAATCCAGGGAGATTGCAATTTAC CTGGTGGTGAGGGGCTGCAATTAATCTGCATTGCAGAATTGACAGAATGGTTTTCTGCATTAGCATTATGCATTAGGTCCAGTATGCTTTGAAGTTGCTC ATCAGTGAAGACCTTGCTAGTTCCTGCAGCCTGCTTGGGTGGTTGAGCATCATTGCCTTCATTACTTGAATCCAAAGGGAAACCAACAGTGTGATTGACC ATTCTGTTGGACCTATTATCTTGGAATCCTGGTGGATATCCATGCTTGAGGAAGCAAGTATCAATTGTATGATTAGTTCTTTGACAATGAGTGCAAAATT TGTTTCCTTGGTTTCTATTCCCAAAGTTTTGCCTAGGTCTGTTTCCCTTATAGATGGATCCAGTCCTTCCTCTAGAGTTATATTTTCCTGAGTTGCCTTC AGCATTTGTAGAGTTCTTGTATGAGTCTTGCTTAGTGCTAAGAGATAGAGCCTTATTTGTTGATTCAGGGTCAGTGAGTATAGGAGCATCAAATTGTCCT TCCTGTTGGCTCAATAGAGAAAAGGCCTTGCTTATGCTTGGTAAAGGGTCATAGAGCATAATTTGGGATCTCACATGTGCATACTGATCATTCAAACCAG TAAGAAACCTCATCACATAGCATTGCTCTCTATAGTTCCTAACCACAGAAATCACACCACATGAGCATGGATTCTGACATCTGCAGCTAGGAATTGGCAT GAAGTTTTCTATTTCTTCCCAAAGACTCTTGAGCTCACCAAAATATTCAGAGATGGTGAGATTTCCTTGGTTCAGGTAGTAAAATTCATGCAGAAGCTTT GAGATCCTGAACATGTCCCCTCTTGAAAATCTTTCTTGAAGATCTTTCCAAACTTCAGCAGCAGAATCAATCCACAGTATTGACTTAACAATAGAATCTT CTACAGATCTTTGTAACCATGCCAAGACCATATTGTTGCATCTTTTCCATAGATCATGCATAGGGTCATCTGGTGCTGGTTTCTTGAGTGTTCCAGTAAT GAACATCAACTTGTTCTTGGAGTCTAAGGCAATGTTCATGGCTCTAGCCCAAGAGTGGTAATTGGAACTGCTCAACCGAGGTGTCACAAGAACTTGTGCA GGACTTTCAGTGGGATGAAGGTAGTATGGGTTGTTGCTTTGGTCCATAGGATAACTTGAGAGTGCCATTTTTGAGAGAGACCGAATAGAGGAGGGAGAGG AGAAAAGGTGAGAAAGAGGGTAATGCTTTGGGAAGATGAATCAGAGCATATGTTGCTCTGATACCATCTTAGAGAAGTGGCAGCGGAAGAAGAAAAGAAG AAAAGAAGAAAATGGCAAGATAATGAACCTTTAGCAAGGAGAAAAAATAAACCAGGGAGTAATAGAGAAGAAGAAGAAAGTTTAACCAAAATAGAAACTT TATTAACCAATAAAACTAATTGACCTTCTATATAAGGAAGGAAAAATAACAGACTAACTAAAACAGAAAGGAATGGGCCAGGGCCCAGAAACTATCTAGA AACAAAAGAAAATAAGGCCAGAAGCCTTAGCAGCCCAGAAGCAAAATAAAAGATAGAAAACAGAAGAAAAGGAAGAGCAATAGGAAGCCATGGAAATCCA TGGAAGCTTAGAGCACAAGAAACAATTTAACAGTTACCTCCGACACTCTCATTTTCTGAAACATCAGGAATTATATTAGCTAATGATATGATTGCCCAAG ACCAGAATAACAAGAACAATAGCTCTCAAGATAGTATTCCTACAGGCGATGAACAAAAAGATTCGAACCTCCCTAAGTCAAATCTGATGCCATCACATTC AGCACATGTTCATATGCCAATGCCATGGCCTTACAATGTTCCTCCATATATGTATAATCTTCAGAATCCTATTCAGCAAATGCCTTCATACCAAGGATAT CCTATGGCTAATATGCCGTCTGTTCATCCTTACCTTCCAAGAAATATGAAATGGCCTTCTAACCAGGGAGAGAATCAGAAATCATCAAAGAAAAAGGAGA AATCTCGGTATAAGAAAGGACCAGAAGAATATGATGACCAGCAGACAGAGTCCAGCGATCCTGACTCCGAGAGTGAATCTAATTCAGATGAACTACGGGA CTCAAACAATTCATTGAAGGATGATTCGAAGAGG
• Tissue: pods
• Gene name: LI_gene_175383;
• Additional information: details;

Expression of Ll_transcript_279862

FPKM

• PAB: 0
• PNAB: 2.8
• PS1: 0.9
• PS2: 0.4
• PS3: 0.5
• PW1: 3.7
• PW2: 5.1
• PW3: 2.7

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_279862

• Blastp: Retrovirus-related Pol polyprotein from transposon TNT 1-94 from Nicotiana with 28.73% of identity
• Blastx: Retrovirus-related Pol polyprotein from transposon TNT 1-94 from Nicotiana with 29.1% of identity
• Eggnog: -
• Kegg: -
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019430200.1)
• Pfam: gag-polypeptide of LTR copia-type (PF14244.5)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;