Ll_transcript_279866

• Id Trinity: TRINITY_DN50198_c4_g4_i5
• Name Transcript: Ll_transcript_279866
• Sequence: CTTCTAAGGCATTTGAGTTTTTTTGCCAAATTGAGTTTCTACATGATTAATGAAGTGAACCAGATGAGACCTAGTCTCAGCCTTGGTTTTTAGGAGAATG ATCCAGGTAAATCTTGAGTGATCATCAACAAGAGTTAAGAAATATTTATGGCCATATATAGAACAAGTAGAATAAGGCCCCCATATATCAGCATGCAATA TATCAAAACAGTCAGAGGACACAGAATTGCTATGAGTAAAGGGCAATTTTCTTTGCTTTGCAGTATGGCATACATCACAAGGAGCAATATTATGACTAGT ATGTATAAAAGGGAAATTTTTCTTAAGCTGCATTAAAACAGAGACAGGGGAATGCCCAAGTCTAAGGTGCCACAAGCAATCATTGTTTACAGATTTAGAG GTTGTCTCAGCATTAACATAGTGTCCTACAAAGTGTCTAGAACTGTCTAAGTCTATAAAAAACAAGCCTTGTTGTGGTCTAGCTGAACCAATCATCTTCT TGGTATGGTTCTGCAAAATTAAACACTTATTGTAAGAAAGGATAAAATGGCATTTTAAATCATGCATGAGTTTATTGACTGATAAGAGATTAATATGGAA TTGAGGAACAAAAAGAACATTTGTGAGTACTAAAGAAGGGGTGAGAGTAACTGTACCAGATATTCTTGTGATAACCTTATCACCATTAGGGAGAGTAATG AACATTGGTGCTATAGACTTATAATTTTTAAAATTGTGCACATCATTAGTGATGTGGTCTGTGGCACCAGTGTCCATAATCCAGGGAGATTGCAATTTAC CTGGTGGTGAGGGGCTGCAATTAATCTGCATTGCAGAATTGACAGAATGGTTTTCTGCATTAGCATTATGCATTAGGTCCAGTATGCTTTGAAGTTGCTC ATCAGTGAAGACCTTGCTAGTTCCTGCAGCCTGCTTGGGTGGTTGAGCATCATTGCCTTCATTACTTGAATCCAAAGGGAAACCAACAGTGTGATTGACC ATTCTGTTGGACCTATTATCTTGGAATCCTGGTGGATATCCATGCTTGAGGAAGCAAGTATCAATTGTATGATTAGTTCTTTGACAATGAGTGCAAAATT TGTTTCCTTGGTTTCTATTCCCAAAGTTTTGCCTAGGTCTGTTTCCCTTATAGATGGATCCAGTCCTTCCTCTAGAGTTATATTTTCCTGAGTTGCCTTC AGCATTTGTAGAGTTCTTGTATGAGTCTTGCTTAGTGCTAAGAGATAGAGCCTTATTTGTTGATTCAGGGTCAGTGAGTATAGGAGCATCAAATTGTCCT TCCTGTTGGCTCAATAGAGAAAAGGCCTTGCTTATGCTTGGTAAAGGGTCATAGAGCATAATTTGGGATCTCACATGTGCATACTGATCATTCAAACCAG TAAGAAACCTCATCACATAGCATTGCTCTCTATAGTTCCTAACCACAGAAATCACACCACATGAGCATGGATTCTGACATCTGCAGCTAGGAATTGGCAT GAAGTTTTCTATTTCTTCCCAAAGACTCTTGAGCTCACCAAAATATTCAGAGATGGTGAGATTTCCTTGGTTCAGGTAGTAAAATTCATGCAGAAGCTTT GAGATCCTGAACATGTCCCCTCTTGAAAATCTTTCTTGAAGATCTTTCCAAACTTCAGCAGCAGAATCAATCCACAGTATTGACTTAACAATAGAATCTT CTACAGATCTTTGTAACCATGCCAAGACCATATTGTTGCATCTTTTCCATAGATCATGCATAGGGTCATCTGGTGCTGGTTTCTTGAGTGTTCCAGTAAT GAACATCAACTTGTTCTTGGAGTCTAAGGCAATGTTCATGGCTCTAGCCCAAGAGTGGTAATTGGAACTGCTCAACCGAGGTGTCACAAGAACTTGTGCA GGACTTTCAGTGGGATGAAGGTAGTATGGGTTGTTGCTTTGGTCCATAGGATAACTTGAGAGTGCCATTTTTGAGAGAGACCGAATAGAGGAGGGAGAGG AGAAAAGGTGAGAAAGAGGGTAATGCTTTGGGAAGATGAATCAGAGCATATGTTGCTCTGATACCATCTTAGAGAAGTGGCAGCGGAAGAAGAAAAGAAG AAAAGAAGAAAATGGCAAGATAATGAACCTTTAGCAAGGAGAAAAAATAAACCAGGGAGTAATAGAGAAGAAGAAGAAAGTTTAACCAAAATAGAAACTT TATTAACCAATAAAACTAATTGACCTTCTATATAAGGAAGGAAAAATAACAGACTAACTAAAACAGAAAGGAATGGGCCAGGGCCCAGAAACTATCTAGA AACAAAAGAAAATAAGGCCAGAAGCCTTAGCAGCCCAGAAGCAAAATAAAAGATAGAAAACAGAAGAAAAGGAAGAGCAATAGGAAGCCATGGAAATCCA TGGAAGCTTAGAGCACAAGAAACAATTTAACAGCCCCCCTCAAGTTGGACGGTGAAGATCACAGAGACCCAACTTGGAAATGAAACTCAGAAAAGCTTTA GGAGGAAGAGACTTGGTAAAAACGTCAGCTAGTTGATTGAGAGAAGAGATAGGAAGAAGATGAACAAGACCGTTCTGAATTTTCTCACGCACAATGTGGC AGTCAATCTCGATATGCTTGGTACGCTCATGGAAGACGGGATTGTGTGCAAGATAAATTGCAGACTGATTGTCGCAATAAGTAGAGATAGGGAGAGCAAG AGGAAGATGAAGATCATGGAATAGATACTGCATCCATTGAAGCTCACAAACCAAACTCCCTAAAGCACGGTATTCAGCCTCAGAAGAAGACCGACTAACT GTGTTCTGCTTTTTAGTTTTCCAGGAGATAAGGGATGGTCCAAGAAAAACGCAGAAACCAGAAATGGATCTTCTGGTATCACTACAACAAGCCCAGTCAG AGTCTGAAAATGCAGAAATGTGCAGGGTGGAAGAAGAAGGGAAAAGAATTCCCTGTGATGGAGATCCTTTAATATAATGAAGAACACGATGAGCAGCAAG CAAATGAATGGAACATGGAGAGGACATGAACATGCTTAATTGTTGGACAGCAAAGGTAATGTCAGGTCTAGAGATGTTGAGGTAAATGAGACGCCCAACA AGTCTCCTATAAGTAGAGGGGTCAGAGATAGGAGTGCCTTGGTCAAGATGCAACTTGAGAGAAGGATCAGAAGGTGTCTTGGCAGGTTTGGAAGCAAGAG TGCCTGAGTCTTGGAGAAGAGACAATGCATAACCCCTTTGATTGAGATGGATACCTTTGGAAGACCTTGCAATCTCTAGTCCTAAGAAATATCTCAATTG ACCCAAGTCCTTGATTTTATAAGCAATGTCCAATGTGTGTTTAACATGCTGAATTTGAGGAAAATCATTGCCAGCAAGGACAAGGTCATCAACATAGACA AGAATTGCAGTGAATGAATGAGCAGAAGATTTGGTGAAAAGAGCCTGGTCTGCAGTGGATTGAGTGTAGCCCAAGGAAAGTAGCTTAGTGGACAAGGTTT TGTGCCATTCTCGACTAGACTGCTTGAGGCCATAAAGTGACTTGTGTAGTCTGCAAACTAAGGAAGAATCAGTAGGCAAGAGGCCTGGAGGGGGGTGCAT ATAGACTTCTTCAGAGAGATCACCATGCAAGAAGGCATTGTTGATGTCAAGTTGTTCAAGGAACCAAGACTTGGCAGCAGCAAGGGCTAGGATTATTCTG ATTGTGGTAATTTTGACAACTGGTGAGAAAGTGTCAAAATAATCAACACCTTCCATTTGATTGAAGCCCTTGGCAACTAATCTGGCTTTATATCTATCTA GAGTGCCATCAGCAAGATATTTGACTTTGTAAACCCATCTGCATCCAATTGGATTTTTGTTAGGAGGCAAGGGAACTATGGACCATGTGTGGTTGAGTTC AAGTGCCTTGATCTCTTGTTTCATAGCTTCTTGCCAACAAGGGATGGAAGAAGCCTGCTTGTAGGTTGAGGGTTCTTGGACAGAGGAGATGGCAAGACAA AATTTCCTGTAAGAAGGTGCACAATTAGTATAGCTGATGGTAGAAGATAGAGGATACAAAATACCTGAAGAAGAGCTAGGTGACTGAGTTGAGGAATTGG TCAGGCTGCAATGATAGTCATGTAAGTGAGGGGGTGGATGCCTGATCCTAGAGGAGTGTCTGGTAGGCAGACTAGGTATTGGTGAAGAGTCATCTGTGTG AGGCTCTACAATAGGCAAGGAAGCTGGGTAATTGGCCTCACCAGGATCAAGGACCATAGCAGTAGGGTCAGTGGTGGATGGTGTGCAGAGTGGTTCTGTG CTTAAATCAGAGCCAAAAATAGTTTGAAAGGGGAACAATTGTTCATAAAAGATGGTGTTTCTAGAGACAAAAATGGAATGAGAATTGACATTGTATAAAA CATAACCCTTGATGCCCTCTTTAAAGCCAAGAAAAACAGACTTGATGCTTCTTGGTTGGAACTTGGTCCTGTGTGCTTGTATAGTGGAAGCATAGGCTAG GCAACCAAAGACCTTCATGTGATCCATGGATGGTAGCTTGTTGTATAAGAGTTGATATGGACTTTGATGATTCAAAAGAGGTGAGGGAATTCTGTTGATG ATGTAAACAGCATGCTGCACAGAAAAATTCCAAAGTTTTGAAGGAAGTTTAGACTGAAAAACAAGTGATCTTGCAATATTAAGAATGTGTTGATGCTTCC TCTCAACAATACCATTTTGTTGAGGGGTTTCAACACAAGATCTTTGGTGAATTATCCCTTTTTGGCCTAGGTAATCATTCATTAAAAACTCTACTCCATT GTCACTTCTAAGGCATTTGAGTTTTTTGCCAAATTGAGTTTCTACATGATTAATGAAGTGAACCAGATGAGACCTAGTCTCAGCCTTGGTTTTTAGGAGA ATGATCCAGGTAAATCTTGAGTGATCATCAAC
• Tissue: pods
• Gene name: LI_gene_175383;
• Additional information: -

Expression of Ll_transcript_279866

FPKM

• PAB: 0.2
• PNAB: 5.3
• PS1: 1.6
• PS2: 1.8
• PS3: 0.9
• PW1: 5.8
• PW2: 9.9
• PW3: 4.2

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_279866

• Blastp: Retrovirus-related Pol polyprotein from transposon TNT 1-94 from Nicotiana with 34.16% of identity
• Blastx: Retrovirus-related Pol polyprotein from transposon TNT 1-94 from Nicotiana with 33.37% of identity
• Eggnog: -
• Kegg: -
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_017415202.1)
• Pfam: Integrase core domain (PF00665.25)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;