Ll_transcript_499277

• Id Trinity: TRINITY_DN50202_c0_g1_i12
• Name Transcript: Ll_transcript_499277
• Sequence: CCGAAATACGAGACATGGGGCAGAAAAACAAACACATGTACAAAGCATATAACGTTGTTGAAGAGTTTTCAATTGAGACAATCGATTTTTGAAGCTCAGC TTCATCATTTTCCTCTCACTTCTACATAAGTATGGCTTGGAGACCCTTCATAACACAGGTTGCTAGGCGTCAATCTGAATTTGGTCTGGTCAAAAGTTTG TTTGTTAGAAGCTATTTTTCTGTCAATAAGTTTGGAGACCATGCAGGGAAGAGGCTTTTGTGTGCACAAGAGAGATTCCAGTCAAGCTACATTAGCAATT TAGCTCGTCGAGTACGGGATGCAGATGAAGCCAGCGAAGTTGCTCATCTTAAAGAACTATACTATCGCAATGATCCTGAAGCTGTGATTAAATTGTTTGA AAGTCAGTCATCTCTGCACTCTAATCCTTCGGCACTTTCTGAATACGTTAAAGCATTAGTCGAAGTTGATAGGCTGGATGAATGTGAATTACTGAAGACA TTGCAGAAAGGTGTTTCCAATTCCCTGAGCAAGGAACGAAGTATAGGTGGTCTTTCTGCTTTTAGAGATGTGGGAAAGTCTATAAATGACAGAGCTCTTG GAACTGCAAGTTCCCCAATTCACATGGTAGCTACAGAAGTTGGGAGTTTTAAAGATCGGTTATGGCGTACAGTTAGGTCCCTTGCCGTGGTTTTTTTATT GATTTCTGGTGTAGGAGCAATTATTGAGGATAAAGGAATCAGTAAAGGACTTGGTATGAATGAAGGAGTACAACCCATCATGGAGACAAATACAAAATTT AGTGATGTAAAAGGTGTTGATGAGGCAAAGGCTGAGCTGGAAGAAATTGTTCATTACCTCCGAGATCCGAAGCGCTTTACTCGTCTTGGTGGTAAGCTCC CAAAAGGAGTTTTGCTTGTTGGGCCGCCTGGCACTGGAAAAACAATGTTGGCAAGAGCTATAGCTGGAGAGGCTGGGGTTCCTTTTTTCTCATGCAGTGG TAGTGAATTTGAAGAGATGTATGTTGGTGTTGGTGCACGAAGGGTTAGAGATCTTTTTTCTGCTGCAAAGAAGAGATCCCCTTCTATAATCTTTATTGAT GAGATTGATGCTATTGGAGGAACCCGTAATCCAAAGGACCAAATGTACATGAAGATGACATTAAATCAGTTGCTGGTTGAGCTAGATGGATTTAAACAGA ATGAAGGCATAATTGTGATCGCAGCTACTAATTTTCCCGAGTCATTGGATAAGGCTTTGGTGAGACCTGGACGGTTTGATCGCCACGTTGTTGTTCCCAA TCCAGATGTAGAAGGAAGACGGCAGATTTTGGAATCATATATGTCAAAGGTACGCTTTTCTCCTTGTAAAGTATGCTTCTTATACTGTAGCTTGGGTTGG ATGGCTTATGATTGTCGAAGGTATGCTTTTCTCCTTGCAAAGAATGCTTCTTATACTGTAAGCTGGGCTGGATGGCTTATGATTCCTGTTTTCGGAGGTA CACGGACAGTTCTCTCACTAAATTGGTGCAAAACATTGATGTTCTATTCTTTCTTTGGGCTATGGTTGGCTATCAACCAATCCTTTTGTGCATGAGCTCA CACCCATTTTTTTTTGTTATATAAATCAACCCTTATGTTTAGACACTTTTCCTCTTACATCATTTTTATACCATCACTCTTCCTATCTCTTTCTTCCTAT CAAATCACATCATCAATCACATTAAAAAAGGTTTAGATAATCATTTTTCTATATAATGTGGTGTCCATGATATCCATTTCTTGTATATTTATAACCCTAT TCCTTACTTGTTGATAGGGATCTCCTGCTATTTAGTAAAACTTGTTATCATTATGTGAGTTGAAATAGCTTGGCCAATGTTGCCTCCATGTGATGATGGT TTTCTTATTTCCATTAAAATACAGATTTTGAAGGGTGGTGATGTTGATCTAATGATCATTGCTCGAGGAACACCTGGGTT
• Tissue: pods
• Gene name: LI_gene_175403;
• Additional information: details;

Expression of Ll_transcript_499277

FPKM

• PAB: 0.6
• PNAB: 0.3
• PS1: 0
• PS2: 0.6
• PS3: 0.6
• PW1: 0.4
• PW2: 0.2
• PW3: 0.6

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_499277

• Blastp: ATP-dependent zinc metalloprotease FTSH 4, mitochondrial from Arabidopsis with 73.17% of identity
• Blastx: ATP-dependent zinc metalloprotease FTSH 4, mitochondrial from Arabidopsis with 73.17% of identity
• Eggnog: Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins (By similarity)(COG0465)
• Kegg: Link to kegg annotations (AT2G26140)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019437019.1)
• Pfam: Holliday junction DNA helicase ruvB N-terminus (PF05496.11)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;