Ll_transcript_499284

• Id Trinity: TRINITY_DN50202_c0_g1_i16
• Name Transcript: Ll_transcript_499284
• Sequence: CTGAAACAAAGGGCAGAAAAACAGACACATTAGCATTTAGTACAAAGTATATAACATTGTTGAGAATGCAATTGAGACCTTTGTTTTTTAGAGCTCAACT TCATCCTCACCCTTTCACTTCTACATAACTATGGCTTGGAGACCCTTAATAACACAGATTGCTAGGCGTCAATCAGAGTTTGGACTGGTCAAAAAATTGT TTATTAGAAGCTATTTTTCTGTTAATCAGTTTGGAGATCGCGTAGGGAATAGGCTTTTATGTGCACAAGAGAGATTCCAGTCAAGCTACATTAGCAATTT AGCTCGTCGAGTACGAGATGCAGATGAAGCCAGTGATGTTGCTCATCTTAAAGAACTATACTATCGCAATGATCCTGAAGCTGTGATTAAATTATTTGAA AGTCAGCCATCTCTGCGCACTAATCCTTCGGCCCTTTCTGAATATGTTAAAGCATTAGTGAAAGTTGATAGGCTGGATGAAAGTGAAATATTGAAGACAT TGCAGAAAGGTGTTTCCAATTCCCTGAGGGAAGATCAAAGCATAGGTGGCCTTTCTGCTTTTAGAAATGTGGGAAAGTCTACAAATGACATAGCTCTTGG AAGTGCAAATTCCCCAATTCATATGGTGACTACAGAGGTTGGAAGTTTTAAAGATCGGTTATGGCGTACATTTAGGTCCCTTGCCGTGACCTTTTTATTG ATTTCTGGTGTAGGAGCAATTATTGAGGATAAAGGAATCAGTAAAGGACTTGGTATGAATGAAGGAGTACAACCCATCATGGAGACAAATACAAAATTTA GTGATGTAAAAGGTGTTGATGAGGCAAAGGCTGAGCTGGAAGAAATTGTTCATTACCTCCGAGATCCGAAGCGCTTTACTCGTCTTGGTGGTAAGCTCCC AAAAGGAGTTTTGCTTGTTGGTCCACCTGGCACCGGAAAAACAATGTTAGCCAGAGCTATAGCTGGAGAGGCTGGGGTTCCTTTCTTCTCATGCAGCGGC AGTGAATTTGAAGAGATGTATGTTGGTGTTGGTGCGCGAAGGGTGAGAGATCTTTTTTCTGCTGCAAAAAAGCGGTCACCTTCTATTATCTTTATTGATG AGATAGATGCTATTGGAGGACGCCGTAATCCAAAGGACCAAATGTACATGAAGATGACATTAAATCAGTTGCTCGTTGAGCTAGATGGATTCAAACAAAA CGAGGGCATAATTGTGATTGCAGCCACAAATTTTCCGGAGTCATTGGATAAGGCTTTGGTGAGACCTGGGCGGTTTGATCGCCATGTTGTTGTTCCCAAT CCTGATGTAGAAGGAAGACGGCAGATTTTGGAATCATACATGTCAAAGGTTCTGAAGAATGTTGATGTTGATTTAATGGTCATTGCCCGGGGAACACCTG GGTTCTCTGGTGCTGACCTTGCAAACTTGATTAACGTTGCTGCTCTCAAGGCTGCAATGGATGGTGGCAAAACTGTAAGCATGGCTGATTTAGAACATGC AAAGGACAAAATCTTAATGGGAAGCGAACGCAAGTCAGCTGTCATTTCCGAAGAGTCACGAAAGTTGACTGCTTTCCACGAGGGTGGACATGCCCTTGTG GCCATTCATACTGATGGGGCCCTTCCTGTTCACAAGGCAACAATAGTCCCCCGTGGGATGGCTCTTGGCATGGTTACTCAATTACCTGACAAAGACGAGA CCAGCATGTCACGTAAACAGATGCTTGCCCGACTCGATGTTTGCATGGGAGGCCGTGTTGCTGAAGAGCTAATTTTTGGAGAAAATGAGGTCACTTCCGG TGCATCATCGGATCTTAAGCAGGCAACTAGTCTGGCAAGGGAAATGGTTACTAAATACGGTATGGGCAATGAAGTTGGACTTGCCACTCACAATTACAAT GATGATGGAAAAAGCTTGAGCTCAGAGACTAGGCTTCTTATTGAGAAAGAGGTGAAGCACTTTCTAGAGAGGGCTTACCACAATGCGAAAACTATTCTAA CCACCCACGATAAGGAGCTTCATGCACTTGCAAATGCTCTTTTGGAGCATGAGACTCTTACAGGAAATCAGATAAAGGTATTGCTTGCCCAAGTTAAATC TCAGAAACAGCAGCAGTCACATATACTTGAAACACAGAGCAGTTCGAAATCCAATACTCTGCCTCCATCATCAAACCCCGCCGTATCTGCTGCTGCAGCC GCAGCTGCCGCAGCAGCTGCAGCTACTGCGGCTGCCAAGGGTGCTGCTGCCAAGGCTCAAGGTGCTCAAGTGGGATCTTAGCAGAAGACACTGGTGATAT GCAGGAAAATAACTATATGAGCAGATTGAAATGTGCAGATAGTAGTTTATTCAGTGGTTTTGAGATTCATGTGGTTGAACTTTTAAGTCAATGGAATTTA AATTATATATCATGGGACACCAGGAATCACATGTGACTGAAAATTGTATCAGCTTTCAAGCCGTGTAGAATAGAACCATTGCTTTGTTTTCAATAAACAT CTTATTTCGAGATGCACTCTAATACTGGAGAGTCCAATATTGGGTAGAAATGCTGATACGCGACATCAATATTTCTTAAGGGTTCACATTTTTCTTTATT T
• Tissue: pods
• Gene name: LI_gene_175403;
• Additional information: details;

Expression of Ll_transcript_499284

FPKM

• PAB: 7.5
• PNAB: 17.9
• PS1: 23.1
• PS2: 12.8
• PS3: 18.3
• PW1: 14.6
• PW2: 11.2
• PW3: 8.3

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_499284

• Blastp: ATP-dependent zinc metalloprotease FTSH 5, mitochondrial from Oryza sativa with 73.81% of identity
• Blastx: ATP-dependent zinc metalloprotease FTSH 5, mitochondrial from Oryza sativa with 75.52% of identity
• Eggnog: Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins (By similarity)(COG0465)
• Kegg: Link to kegg annotations (4326311)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019443108.1)
• Pfam: AAA domain (dynein-related subfamily) (PF07728.13)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;