| Id Trinity | TRINITY_DN50209_c0_g2_i16 |
|---|---|
| Name Transcript | Ll_transcript_498263 |
| Sequence | GGAAGCGCAAGGAGGAGGAGAAGCCTAAAAAGCAGAACCCCAGATGACAATGAAGGATGGATGCGCATTTTTTGTATATGTCATTAAGATTCTGTGGTTT AGGCCATTTTATTTAGGCTTAAAAAATGTCATTCTAAAATAGTGTTATTTTTGAAAATCTGAAAAAAATTAGCATCTTAAAAGCACTGAATTGCAGCTTT ATTTTGCCGAAGCTTTTGGCTTACTGTATAAAGGCCAACCAAACAAATGTTAAGCGTAGAAGTGTTACAGGTAATTTTTTATTTAAATATGATTATATAT ATGATTCTAGTTACGGGTAATTTTTTTAGGCTGCTGAACTGCAACAAGCTAAAGCTAACAGCAAATCTGCATCTGCTGCTGATGAGGATGATATGGACCC AACGCAATACCATGAGAATAGGCTAAAGTATCTTGCAGCTCAGAAAGCAGAAGGCAATAACCCATATCCTCACAAGTTCTTTGTCACACTCTCTATTGAT CAATACATCAAGAAATACGAAGGGTTAAGCGATGGGGAGCACCTTGAGGACATCTCTGTCTCCTTGTCTGGCCGAATCATGCACAAACGTGCTTCTGGTG CAAAGCTTGTCTTTTATGACTTGCATGGTGGTGGTCTCAAGGTCCAGGTTATGGCTGATGCAAGGAAATCGGACTTGGATGAGGCTGAATTTTCAAAATT CCATTCTAATGTGAAGCGTGGTGATATTGTTGGTATCACAGGGTTTCCAGGAAAAAGTAAGAAGGGTGAGCTCAGTATTTTTCCGAGGACTTTTGTATTG CTGTCTCATTGTCTGCATATGATGCCAAGACAAAAATCTGCTGCTGCTGCTGCCGATAATGCAAATTTGAAGAAAAATCTGTGGGTTCCTGGAAGTACCC GGAATCCAGAAACATACATTTTGAGGGATCAGGAAACACGATACCGGTTACGTCATTTGGATCTGATGCTTAATCCAGAGGTTCGAGAAATATTCAAGAC TAGGTCTAAAGTTATTTCTTACATTAGGAGGTTCCTCGATGACCTTGATTTCTTGGAGGTTGAAACACCTATGATGAACATGATTGCTGGTGGAGCAGCA GCTCGTCCATTTGTAACTCATCATAATGATCTTAACATGAGGTTGTTCATGCGAATTGCTCCTGAACTCTATCTTAAGGAGCTGGTTGTTGGTGGTATAG ATCGTGTTTATGAAATTGGCAAACAATTTAGAAATGAGGGTATAGATTTGACTCATAATCCTGAGTTCACTACCTGTGAGTTCTATATGGCTTATAAGGA TTACAATGATTTGATGGAGATAACAGAGCAAATGTTGAGTGGCATGGTTAAGGAACTTACAAAAGGCAGCTATAAAATCAAGTATCATGCAAATGGGATT GATATGGATCCTATTGAAATTGACTTCACTCCACCTTTCAGGAGGATCGACATGATTGAGGGATTAGAGAAGATAGCAGGCCTCAGTATTCCGAAAGACT TGTCGAGTGATGAAGCTAATCAGTATCTGAAGGATGCATGCTTGAAGTATGAGATCAAATGCCCTCCTCCTGAAACAACCACACGTTTGTTGGATAAACT TGTGGGGCACTTTTTGGAGGAAACTTGTGTAAATCCTACATTCATCATTAATCATCCTGAGATAATGAGTCCTTTGGCAAAATGGCACAGATCAAAACCA GGCTTGACTGAACGTTTTGAATTGTTTGTTAATAAACATGAACTTTGCAATGCGTATACCGAATTGAACGACCCTGTTGTACAAAGACAGAGGTTCGCTG ACCAACTCAAGGATCGGCAATCAGGTGATGATGAAGCAATGGCCTTAGATGAAACATTTTGTACGGCCCTGGAGTATGGTTTGCCGCCAACCGGTGGCTG GGGTTTGGGCATTGATCGGTTGACCATGTTGCTGACTGATTCACAGAATATTAAGGAGGTTCTTCTTTTCCCTGCCATGAAGCCTCAAGAATGAATCTTC AATCAACACTTTGAGTTCTCATTTCATCCCATTGAATAGGTATATCATGCTTATGTCATTAAACATCCGTACTTATTCATTGTACATGTTTAGGGAAGTA TAGGCAAGGTGCTAAGGTGAGAAAGTGACCTTTTTTTGTAAGGTGAGAAAGTGAGGTCGTATCCACATTGATTTGACCTACTGTATAGAAATCTCATCCC CCATTAAATGATCCAATAGGTGATACTAGAAATTCAAATTGTGGACTGCATGTGATTCGGCTACAATATTATTATGATTGCAGTGACCGTCGCAACCGTG TCACACCACAATTGCATTGTGATACCGAACCACAATGCTATGGCTGCATCGGATCATATCGATTTAAAAGATATTTTTCATCCAAAATATTTAAAACCCG GACCACAATCGTGACTGCTATTTAAAACCCGGACCACAATCGTGACTGCTATTTAAAACCCTAGTCGTTACATCGTCACTTTCTCACTTTTGCCAATGAT CCATTGAGGATGGGGTGCGACCTGCTCATGTTAGTTTGTGTTATAATCCTTTTTTTGGGTGGAACTTTAAGGGTATGTTTGGGAGTCGTGAGGGGAAGGG AATGAAAGGGATCAAAGAGTTAGGAAGGGAGAGGAAGGGATGGGAAAATGAGGGTTATCCTTTCCATTGTTTGGGAGTACAAATTTAGATGAGGGATGGT TGACTAATGATAATGTTAGATTTTTTTTTATTTTTCCTTCAAAAATATAATTATCACTGAAAAAATAGAATAATATATAATTATATAATATTA BLAST |
| Tissue | pods |
| Gene name | LI_gene_175456; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_498263
| Blastp | Lysine--tRNA ligase, cytoplasmic from Arabidopsis with 78.57% of identity |
|---|---|
| Blastx | Lysine--tRNA ligase, cytoplasmic from Arabidopsis with 77.38% of identity |
| Eggnog | lysyl-trna synthetase(COG1190) |
| Kegg | Link to kegg annotations (AT3G11710) |
| CantataDB | Link to cantataDB annotations (CNT0001053) |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019431528.1) |
| Pfam | OB-fold nucleic acid binding domain (PF01336.24) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |