Ll_transcript_498253

• Id Trinity: TRINITY_DN50209_c0_g2_i7
• Name Transcript: Ll_transcript_498253
• Sequence: CTTTTTATTTTGCGTAGAGTTTATCATGTTTGATTTTAATAGAGCTAAAAAGAACTGCTATATCTTTAATGCAGTAAATCAGACTTGGATCAAGCTGAGT TTTCTAAATTCCATTCTAATGTGAAGCGGGGTGATATTGTTGGTATCACTGGATTTCCAGGTTTGGGATGCTACAAACTTTTAGTTTTCTCTAATATTTT TCTTGAGTTTTCCAACCCCACCTTGTAGGATTAAGGCTAGGTTGTTGTTGTTATTCTTTTTCTTGAATTTGTCTTTCTTCCACATACCATCTGCCCTTAA CAATCTAATTCTATGGCTTTGAAAATATATTCTAGCAGTAAGGAGAGTAAGTAATTTTTGTTTAGGAATTATATCTTGGTAAATATTTGTGAATGACTTC GAAATATGTATCTAATTGCTAAAACTTTGAAGGCATATGTATTGTGCTGATATTGAATACAAAAGGGCTAAAACCTGCTTATATATTATATTATTTTGAT GCTTCATAGTTTAGATGCATTCTATATTTTTATTTTTTGAAATCTATGATGCTTACTTTAAAAACAACAGTTTTTTCAGTTTTCTCTTCAATTGTCCAGG AAAAAGTAAGAAGGGAGAGCTCAGTATTTTTCCAAAGACTTTTGTATTGCTGTCTCATTGTCTGCATATGATGCCAAGACAAAAATCTGCTGCTGCTGCT GATAATGCAAATTTGTTGAAAAATCCGTGGGTTCCAGGAAGTACCAGGAATCCGGAAACATACATTTTGAAGGATCAGGAAACAAGATACCGGTTACGCC ATTTGGATTTGATGCTTAATCCAGAGGTTCGAGAAATATTCAAGACTAGGTCTAAAGTCATTTCTTACATTAGGAGATTTCTTGATGACCTTGATTTCTT GGAGGTTGAAACACCTATGATGAACATGATTGCCGGTGGAGCAGCAGCTCGCCCATTTGTAACTCATCACAATGATCTTAACATGAGGTTATTCATGCGA ATTGCCCCTGAACTCTATCTCAAGGAGCTTGTTGTTGGTGGGATAGATCGTGTTTATGAAATTGGCAAACAATTTAGAAACGAGGGTATAGATTTGACTC ACAATCCTGAGTTCACTACCTGTGAGTTCTATATGGCTTATAAGGATTACAATGATTTGATGGAGATAACAGAGCAAATGTTGAGTGGCATGGTTAAGGA ACTTACTAAAGGCAGCTACAAAATCAAGTATCATGCAGATGGGATTGATAAGGATCCTATTGAAATTGACTTCACTCCACCTTTCAGGAGGATTGACATG ATTGATGAACTGGAGAAGATAGCAGGCCTCAGTATTCCGAAAGACTTGTCGAGTGACGAAGCTAATCAATATCTGAAGGATGCATGCTTGAAGTATGAGA TCAAGTGCCCTCCTCCTGAAACAACTACACGTTTGTTGGATAAACTTGTGGGACACTTTTTGGAGGAAACCTGTGTAAATCCTACATTCATCATAAACCA TCCTGAGATAATGAGTCCTTTGGCAAAATGGCATAGATCAAAACCAGGCCTGACAGAGCGTTTTGAATTGTTTGTTAACAAACATGAACTTTGCAATGCA TATACTGAATTGAATGATCCTGTAGTACAACGACAGAGATTTGCTGATCAACTCAAGGATCGGCAATCAGGTGATGATGAAGCAATGGCATTAGATGAGA CATTTTGCACGGCCCTGGAGTATGGTTTGCCACCAACTGGTGGTTGGGGTTTGGGCATTGATCGGTTGACCATGTTGCTGACTGATTCACAGAATATTAA GGAGGTTCTTCTCTTCCCTGCAATGAAGCCCCAAGATTGAACATGGTGTTGTCATTTGGTCCATTAAAAGCATCCTTCATAGGAACAGGAAAAAATCATG ATGGATCTCAGTTTTGATTTTTTTTATTTGGTATGTACTGCTCAAGCAGCATCTACACTTTTTGTTTTAAGGGCAGATGGAAGAGTTTGTATACTCTATT TTATTTGATTCTTTTGGTGATCCCGTTGAGTTTTATGTCATATACCAATTTATTTATTATATATTAGTGATAATAGTTATATATACATTGAGAAAAAGAT ATATTCACTGACAACGTAATTGCGTAAGAGATTTTTATAATGTTACTGTATTATCTATCATTCATTTTTAATAGTTGACTTTTAAATGAAATTAAATAAA AGTAATATAAATGAAAAAAAAAAAA
• Tissue: pods
• Gene name: LI_gene_175456;
• Additional information: details;

Expression of Ll_transcript_498253

FPKM

• PAB: 0
• PNAB: 0.3
• PS1: 0.2
• PS2: 0.4
• PS3: 0.1
• PW1: 0.4
• PW2: 0.1
• PW3: 0.2

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_498253

• Blastp: Lysine--tRNA ligase from Oryza sativa with 85.27% of identity
• Blastx: Lysine--tRNA ligase from Oryza sativa with 85.27% of identity
• Eggnog: lysyl-trna synthetase(COG1190)
• Kegg: Link to kegg annotations (4333345)
• CantataDB: Link to cantataDB annotations (CNT0001053)
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019439359.1)
• Pfam: tRNA synthetases class II (D, K and N) (PF00152.19)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;