Ll_transcript_496859

• Id Trinity: TRINITY_DN50225_c4_g4_i1
• Name Transcript: Ll_transcript_496859
• Sequence: TCGTCACGTTCGATTTTAGTGGTTGTTCATCTTGTGCAGAGTCTCACAAACCTCGAAAACCCTAAACATGCCGCCATTACCGTCTCTGCAACTTCGAAGA CTCTTGCTTCGATCATTCCGCTCTTCTTCCTTCTCATTCTTCTCTTCTTCTCCAATTCATTCCACTCCTCTACTTCCCAAACTACCTTCTTCCACTCTTT CATCTCCTAATTTTCTCACTTCACCTTCATTCTTCACAACCCTTCATTTCTCTTCCCAAACCTTACCCGATGAATCCGATCCAATTGTGCGATCTCTCTC CTCTGCACTTCTCAATGATCCTGATTCCGATCCTGTCTCTGTCTCTCAGCGCCTCCACCTCAGCTTCTCTCACATTACCCCAACCCCTGATTTGGTCCTC CAAACCCTAAATCACTCACCTGATGCTGGACGCACCGTTTTAGGGTTCCACCACTGGCTGTTTTCCAATCCTAAATTCATGTATACTGATGAAACCCTCT CATTCTTCGTTGATTACTTCGGCCGCCGCAAAGATTTCAAGGTAATTCATGAACTTCTCGCTAGCGAAAATGCCCGCTCCGTTGCCGGGCCTAGAACTCT ATTCTCTGCGATTGACCGGATTGTCCGAGGGGATCGAGCCAGTCGAGCTGTTCAATTCTTTGAGAAAATGGAAACGGAATACGGTTTGAAGCGTGACCGT GATTCATTGAAGGTGGTGGTTGAGAAGCTAAGTGGAAAGGGGTTTGCGAGTCATGCTGAGAAAATGGTGAAGGATTTGGCGAATAAATTCTTTCCGGATC AAGCAATGTGCGATATGTTGATAAAAGGTTGGTGTGTTGATGGGAAACTAAGAGAAGCTCGTAGGCTCGCAGGTGAGATGTATCGTGGGGGGTTTGAGCT TGGCGTTGATGCTTATAACGCAATGCTTGATTGTGTGTGCAAGCTCTGTCGCGAAAAGGATCCCCTCCGGATTCTATCGGAGGCGGAGAAGGTTCTTGTT GACATGGACTATCATGGGGTTCCAAGGAATGTGGAGACATTCAATGTGTTGATAACGAATTTGTGTAAGATTAGGAAAACGGAGGATGCTTTGAAATTGT TCAATAGGATGGGGGAGTGGGGTTGTTATCCCAATGAAACCACATTTCTTGTGTTGATTAGGAGTTTGTATCAGGCTGCGAGGTTGGAAGAAGGGGATGA AATGATAGATAGGATGAGATCTGCTGGCTTCGGCAAAGTGCTTGATAAGAAGGCTTACTATGAGTTCCTCAAGATTTTGTGTGGCATTGAGAGAATTGAT CATGCTTTGAGTGTCTTTGCAAAGATGAAGGCTGACGGTTGTGAACCTGGGGTTAAGACTTATGACTTGTTGATGGGGAAATTGGGTGCCCACAATCGTG TTGATAAGGCTAATGCTCTCTTCAATGAAGCGAAGAATAGAGGAGTGCCTATCACACCCAAAGACTATCCTATTGATCCTAGGTTCTTGAAGAAGGCCAA AGATGCCAAGGGGGAGAAGAAGGTGAAGAAGAGGGAAACTTTGCCTGAGAAAATGGCTAGGAAGAGAAGTCGGCTGAAACAGATTCGGTTGAGTTTCGTG AAGAAGCCTAAGCGAATGATGGGTGGGCGCGGCTGATCTCTCATTTTTTTACTCTTAGTATGCCATTGGTTTATCAATGGTTTTGCAACATTGAACTTAT TGTTTTCTTTATTTTAACATATTCTGAATTAAATTCTTGTTTGGAACGGGTTTCTTGCTTGGGACTACAAGCATTGATTTGATCCTCTTTGTTAGAACTT AGAAGTGCCTCATGCCAACACTTGCTGTTGAGCACATAATAGATGTGGTAGGGGTTTGCACGTGCCCTGTTCTTCTATCCAAGTTTGTCTTTTTCAGGTG GCTCCTTTCACATTTAAGTACATAACCTCATTCATGTCCTCTCAGAATCAGTGTTTGATGGAACTGTTTTACGTGTTTCACTTGCTGAGAAGCTCATAGG ATTTTATGGCTGTATTATGTTGGTTAAAGATTCAAATTCGAATTCTGAAATTGAATGCACACAAGGACACTGTAGTGGATGCTCTAACATACTTATGTTA TAACAAGTAGCTTCTGCCCATTCTAGCTCAAATTTTTAGTTATCAATTTGCACTATCATCACAATGTGGTACGGAGATTACCCGTCCCGAACGGTGTCCT ATTTTCCATCCCAAACCAATAAGAGAGGACAAATTATGAGACACCGGGGACAAGTGATCTCCATCCCACAGTTAGATAGCATTGAAAATCACTCAATTCT TTCTTTCTCTCTCTTGTTGTACACACGTCACACGTGCACGCGCATACTTTGACATGGACAAATAATAATAAACAAGCCTATCTGCATTTACCTACTCTGA GTCTGAAACTCTAGTTCTTTATATCTTCTTTCTCATTCTGTTTACATGGGTGTGTATGAATGAAAAGACAGTATGTGAGGACCTCCCTTTCAAAGTGTGT TGTATTATTGGAAAAAGAATTATCGCCAGAGAGATAAGTGATTGATTTTATACATATTCTTAATGATAAAAATGTGATTTGATAATAAACAAGAGGATAA AAGTATCATTATATATTGTATTTTATATGTTATTTTGTGTCATTTATCTCTTCATTAATAGAGATGATCCGTAGTCGTATTGTTGATTATTAATCTATAG TGCAATCCACTAACAAACAATCACTAATAATTGGCAAGTAGGAATAGGTTTCATGATAGATGCG
• Tissue: pods
• Gene name: LI_gene_175592;
• Additional information: details;

Expression of Ll_transcript_496859

FPKM

• PAB: 4.8
• PNAB: 25.7
• PS1: 15.1
• PS2: 12.7
• PS3: 14.6
• PW1: 12
• PW2: 8.8
• PW3: 5.9

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_496859

• Blastp: Pentatricopeptide repeat-containing protein PNM1, mitochondrial from Arabidopsis with 60.92% of identity
• Blastx: Pentatricopeptide repeat-containing protein PNM1, mitochondrial from Arabidopsis with 61.06% of identity
• Eggnog: Pentatricopeptide repeat-containing protein(ENOG410Z7Z7)
• Kegg: Link to kegg annotations (AT5G60960)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019464245.1)
• Pfam: PPR repeat (PF01535.19)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;