Ll_transcript_498042

Id TrinityTRINITY_DN50227_c1_g1_i8
Name TranscriptLl_transcript_498042
SequenceTTTCATTCTTATGTTAGATTTAGATGTCAACAAACAAATATTACTCGGGAACATGTGGGCCTTACAGTTTGGACCATAAACATCCTTATAATATAAACCA TTTGATGTTTTTGTGTGAGCAATTGCTGAAGTACTACTAGTACTAGCAATTGCACATGCTTATTAAGAAGAGCTACTATTTAACTGTTTTGCACTATTGT ACTTGCCTGAGATGAACCTCCGAGATTATATGAGCATTAAATTTAATTTACAATGTAGAAACTACAAACTTCACTGTGTTCTTCTATGAGTCAAAAGAAA GGAGACAGATATTGCGGTTTTCTTGGAAATCCTGCATATTGAGACATTTTTAGTTTCCATCAACAGCATAGCTTGGATGTAATAGTCATTAGTACACAAG GAGATCTTCCATTTTGCTTGATGTGTTACTTTTATCTTTTACACATTCTTGGTTCTCTTTCATCCAGATAATTGATGTTCTGGAACTTATCCCTTCCCAT GTGGTGGTGGTGTTTGACCATGATGGAGTTCCTTTTGGTCCTACTTATAATTCATCAAAAGGAAGTTTTACTGCAAAAGGCCAAAATTTTCGCCACAATC TATACCCCTCATACAAGAGCAATCGTCCTCCAACTCCTGATACTATTGTTCAGGGGCTTCAATATCTCAAAGCATCCATCAAGGCTATGTCCATAAAAGT CATTGAGGTTCCAGGTGTAGAAGCAGATGATGTGATTGGAACATTAGCCATAAGGAGTGTTGATGCTGGGTACAAGGTCCGAGTTGTCTCCCCAGACAAA GATTTTTTTCAGATTCTATCTCCTTCATTACGTCTCCTTCGAATTGCTCCACGTGGTGATCAGATGGTTTCATTTGGAGTTGAAGATTTTGAAAAGCGAT TTGGAGGTCTGAAACCATCTCAGTTTGTTGATATGATTGCACTTACTGGTGATAGAGCTGATAATATTCCAGGTTATTTTGTTCTCCTCTATGTCGACAC TGAAACATCATTTGCTGAAATATGACTAAGGAGTTAGAACTTAGAACATGGTTACAGAGAGTCTATGTAGATTTCAAAATTGGGAATAAATTTATTTGTC ATCTTTGAAATCAATGGGTATTAAGACCTATGGGCTGTGAAAATATTGGGATTATTATTGTATTGTGAGAATGTGAGTCTTATGTTAGGAGTGTTAGGTC AAAATCAATTTTTTCTAACCATTGCCCTTACGGTAATGTTTAAGCAACCTAACAAAGTTAAGTCAGCATGGAAAAACTAAAATTGTTTTATCTTAATTAA ATACTCCAATTCCCATTGAATTTCCTTATGTGGGTTGCTTAAACATTGCACTAAGGGCAACAATGGTTAGCAACATAGAAAAACTGTTTTTTATTTATAA AAAAATGTACCATAGTTGTACATGCCTAGATTATTAGCATAAGAAGTAGTATTAGAAGTATAACATTATAGACAAAAAATCAGGAAAATCACTTACCAAA CATGTTAACTTGCCAAGTTAAATATCAATCAAGGTCTGGATCATAATCATTTCCCGTCTTTTTACATGCCTAACTAATGGATCGTCACCCTCATAGAATA GAGATAAGAATGGAATCACCTATCTGTACCAAGCATGCTCTTAGGGGATAATAAGTTATATATGCCTCTGGAATTTTAAGAAATATTTAATACTTTTAGT TCTTTATAACTGCAGGAGTTCATGGAATTGGAGATGTACATGCGGTGCAGTTGATCAGTAAATTTGGAACATTAGAGAGGTTATTGGATTCTGTTGATCA AGTTGCAGAGGATCGTATTAAAAAGGTATGCATGGTCAATGTTATGCTTTGTGTGCAACTTTTGTTTGATGTCATGGTTACGTTGTTCTCGTTGGATCTT GATATTGCTTGGTTCAATATGATTTGTAAGGTTTCTCCATGCAATTAGCATCTGAATAATCCCTAGTGTGAATCCTTGTATGATAGTTTTTTACCTGTTA AAAACTAATATATTCATGTTCATAGTCTACATCAACACCAATATTGTGATTTCATTTGCCGTTTTCTTTGTAGGCGTTGATTGCAAATGCCGAGCAGGCT CTCCTTAGCAAAGAACTGGCGTTGTTGCGCTGTGATCTTCCATTCTACATGGTACCATTCACTACAAAAGACATCACATTTAATAAACCAGAGGATGATG GGAGCAAATTCAAT BLAST
Tissuepods
Gene nameLI_gene_175620; 
Additional informationdetails; 

Expression of Ll_transcript_498042

Labels

PAB abscising pods
PNAB non-abscising pods
PS1 seeds stages 1-3
PS2 seeds stages 4-6
PS3 seeds stages 7-8
PW1 pods wall stages 1-3
PW2 pods wall stages 4-6
PW3 pods wall stages 7-8

Annotations of Ll_transcript_498042
Blastp5'-3' exonuclease from Aquifex with 43.62% of identity
BlastxDNA polymerase I, thermostable from Thermus with 41.91% of identity
EggnogStructure-specific nuclease with 5'-flap endonuclease and 5'-3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic apyrimidinic (AP) site-terminated flap. Acts as a genome stabilization factor that prevents flaps from equilibrating into structurs that lead to duplications and deletions. Also possesses 5'-3' exonuclease activity on nicked or gapped double- stranded DNA, and exhibits RNase H activity. Also involved in replication and repair of rDNA and in repairing mitochondrial DNA (By similarity)(COG0258)
KeggLink to kegg annotations (aq_1628)
CantataDB-
Mirbase-
Ncbi proteinLink to NCBI protein (XP_019424416.1)
Pfam5'-3' exonuclease, N-terminal resolvase-like domain (PF02739.15)
Rfam-
GOLinks to GO: General; Genes and gene products; Annotations; Ontology;
Links to GO: General; Genes and gene products; Annotations; Ontology;