| Id Trinity | TRINITY_DN50249_c1_g3_i2 |
|---|---|
| Name Transcript | Ll_transcript_498765 |
| Sequence | AGGAAAACAAGAAAGAAAAACCAGAACCAAACACAGCATTCAAGTCTTGAAAATAAGATAATATTCATTGGTGTGAGAAGCATGGCAGATGTTGTTTTAG TAGTTGATGATTTGAAATATATTGGTAGGATTTTTCGCTGTAGAATATGTCATGAAGAAGAAGAGTTTGAGAACTCCACAAGCATGGAAGCACCTTGTTC TTGTTCTGGAACCATTAAGTTTGCTCATAGAGATTGTATACAAAGATGGTGCAATGAGAAAGGAAATACAATCTGTGAAATATGTCTTCAGGAATATGAA CCTGGATATACGGCACCTGTAAAGAAATATGAAGAAAATGATGAAGCAATGTCTATTGGGGAGGAAGAAGAGTTAAACACAAGAATAGAGGAAATGGAGG AAGGAGTTACATTAGAGTCTGAATGTACCTTTGATGCTGACACAAACCCATCTCATTTCCGATTACTAGCATTAACTATTATAATCATCTTGCTTTTAAG ACATTTCTTAGCAGTGTGTACAAATGGAACAGATGATTACCCATTTACAATGTTTACTGTTGTTATACTAAAGGCTAGTGGGATTATTATACCCATGTAT TTTATTATTAGGATAGTAGGAGCCATTCAGAACAGTATCCAGCATTACCATCAGGTTTATAACTATCACACATCAATTGCTGATGGAGATGAAGAAAACC ATTTATCATATGATTAAATACATTCATAGATTTTTTTTTTGTTTTGTTTTTGCTTTATGATGTATATCAGGGAGTATGATGATGCTCATTAAAATGTCTA ATAGTGTTTTAAATTTATGACAATGTAAATCAAGTATTAATTTGTGAGTAGCAGAAGAACTAAATTCACCTATTTGCATTGACTTGAAAATGAGTGTATC ATACAATCTGCTAAACATGTAC BLAST |
| Tissue | pods |
| Gene name | LI_gene_175779; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_498765
| Blastp | E3 ubiquitin-protein ligase MARCH2 from Danio with 37.74% of identity |
|---|---|
| Blastx | Probable E3 ubiquitin ligase SUD1 from Arabidopsis with 42.86% of identity |
| Eggnog | (Membrane-Associated Ring finger (C3HC4))(COG5183) |
| Kegg | Link to kegg annotations (555611) |
| CantataDB | Link to cantataDB annotations (CNT0000623) |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019440677.1) |
| Pfam | RING-variant domain (PF12906.6) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |