Ll_transcript_498775

• Id Trinity: TRINITY_DN50249_c1_g3_i5
• Name Transcript: Ll_transcript_498775
• Sequence: AGGAAAACAAGAAAGAAAAACCAGAACCAAACACAGCATTCAAGTCTTGAAAATAAGATAATATTCATTGGTGTGAGAAGCATGGCAGATGTTGTTTTAG TAGTTGATGATTTGAAATATATTGGTAGGATTTTTCGCTGTAGAATATGTCATGAAGAAGAAGAGTTTGAGAACTCCACAAGCATGGAAGCACCTTGTTC TTGTTCTGGAACCATTAAGTTTGCTCATAGAGATTGTATACAAAGATGGTGCAATGAGAAAGGAAATACAATCTGTGAAATATGTCTTCAGGAATATGAA CCTGGATATACGGCACCTGTAAAGAAATATGAAGAAAATGATGAAGCAATGTCTATTGGGGAGGAAGAAGAGTTAAACACAAGAATAGGGGAAATAAGAG AGAAAAG
• Tissue: pods
• Gene name: LI_gene_175779;
• Additional information: details;

Expression of Ll_transcript_498775

FPKM

• PAB: 0
• PNAB: 0.2
• PS1: 0.2
• PS2: 0.2
• PS3: 0.2
• PW1: 0.6
• PW2: 0
• PW3: 0.8

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_498775

• Blastp: E3 ubiquitin-protein ligase MARCH2 from Danio with 37.74% of identity
• Blastx: Probable E3 ubiquitin ligase SUD1 from Arabidopsis with 42.86% of identity
• Eggnog: (Membrane-Associated Ring finger (C3HC4))(COG5183)
• Kegg: Link to kegg annotations (555611)
• CantataDB: Link to cantataDB annotations (CNT0000623)
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019440677.1)
• Pfam: RING-variant domain (PF12906.6)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;