Ll_transcript_498805

• Id Trinity: TRINITY_DN50249_c1_g4_i13
• Name Transcript: Ll_transcript_498805
• Sequence: CTTCCGATTACCCCCACATAGGTACATCCACGTAACTTTCTAAAACAGAAATTTCATATAAGGAAAATGAAAAGATCTTATCTATGTCGACAGATTTAAT TTTCTTTTCATGTGACAATGTGAAATCATACAAGGGTAGTATTGGAAATTCACGACTCCTTTTATATATAACTGATTTCAGATAAAGAAAAACAGAGCAC AAGACAGAATTTGAAAGAGAGAAAAAAAACAGAGCAAAGAACTGTGTTTGGGAGAAGAAAACATGGAAGAGGTTGTTTTGTTCGTTGATGATTTGAGATT ACTTTCTGGGGTTTCTCGTTGTAGAATTTGTCATGAAGAAGAATTTGAGAGCGTAAAAAGCTTAGAAGCTCCTTGTGCTTGTTCTGGAACCGTTAAGTTT GCTCATAGAGATTGCATTCAGAAATGGTGCGATGAGAAAGGAAATACAGTTTGTGAAATATGTCTCCAGAAATATGAACCTGGATATACAACAGTTCCAA AGAAATGTCAAATTTCTGATGCAACAATGACCATTAGGGGAAGCTTACAAATTTCAAGAATGGAGCAAGAACCGTTAAATGCAAGAATAGAGGGTATAGT TGAAGGAATAGCAATAGAAGACCATTATTCTGAATGCACTTCTGCTGCAGATAGAAGCGCCTCTTGCTGTAGATCAATGGCTTTAACTGTAAGCATTATC TATATTATCTTTCTTTATTCATAGGAGAATGGTAAATTTTAGTAGATTTGAAATAATTTTCATGTTAGTGAACCTGGCAAGTAGCATTGCTATACATGTT TTTTATACTATAATTAATAGGTCTGAAATTGGAAACTTACTAAGGAAAAAATGATCTTGCCTTAACTTAGAAAAGAATAAGTCAAAGTTCCCAAAGTAGG CTGCAATTAGTGCCAAGTCATCAGCACATGGCTCTAAGTAAGTGCCATATTGCATGAAACTTAAGCATATTTTCCCTTCAAGGAAATAAAGGATTTTTTG ATCCCCTATCTAAACACACACTGGGAGTATTTTCTTGTTATTCAAATTAGTAAGGAAGAGCTATCTTCTATTTTTGAGTCCGGTTTTTACCTGTCGTTGT GGTGGATTTGCTGATACTGATATGAACTTAAGCAGAACTATAACTAGGAGTATTTTTTAAATTGTGATGTTAATGACATGAAAATAACTAGTAACTTTCT AATTTTGCAGTTTACACTCATCTTGCTTGTAAGACATTTATTTGAAGTGCTTTCAAATGGAATGGAAGATTACCCATTTACAATTCTTACTGTTTTTATA CTAAGGGCCAGTGGAATTATTGTACCTATGTACATAATTATTAGGACGCTCGGAGTCATTCATAAAAGTATTCAACGTCACTATCTTCAGGTTTATTTTC ATTTTCATGTTTTATTTAATCATTCTTTAGTTGGGCATGATTGATTCTTTGATTGTGATTTGTGAGTTTGGTATGTGATCACAACTGAAAGAATGATTGT TCATCTTTATATCAGGATTCTGACCATGACACATCGATGTTTGATGGAGATGATGAAGAAAATGAGATATCACATGTTGCAACTTTAAGACATTAATCAT AGTCATGGGTTGTTATTTGCTTTACATTTGTGTCTGAGCATTATGCTAATGCTCTTGGCAAATTCCAGTGTTTTGGGGCATATTTTTTTATAAAAAGAAG AAAAATGATTTAAGATCGATATGCACCTTCTCTTACAGCATCTATAGTGTGATTATTGTCTCAACTACCCACCAAACCAAAACTGTAGAGAGAACAAGTG AATTCACCAACATGTTTCACTTGTGTTGTAAATCAAGTTGATTGTAGGACATTCTAAAACATGTCCAATGGGTGGGACAACCTTCAATTTGTTCTGAAAC ATGAAGTTTCATCACAGATTCCGCTATAACTATTTGTAGGAAAAGCACACAGCCAATGAAACAGATATTTGCACAACAGATAGAAAAAGCAAGACACAGC CATCCTGTTAGGATTGATGTCAACATAGATTGCTATTTAAGAGTTATTGCTTTTCAATGAATGAATTACCATTTTTATGATAAAACCAATGAGGACTAGC CATTTGCATTTGATATTTCTTAACGTTCAATAATAATTGTTGTTCTGAAATAGTTTACTTTGGGAACTGTTGCACAATAAAAATGTTTTCC
• Tissue: pods
• Gene name: LI_gene_175780;
• Additional information: details;

Expression of Ll_transcript_498805

FPKM

• PAB: 0
• PNAB: 0
• PS1: 0
• PS2: 0
• PS3: 0.1
• PW1: 0.5
• PW2: 0
• PW3: 0.9

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_498805

• Blastp: Probable E3 ubiquitin ligase SUD1 from Arabidopsis with 41.67% of identity
• Blastx: Probable E3 ubiquitin ligase SUD1 from Arabidopsis with 41.67% of identity
• Eggnog: (Membrane-Associated Ring finger (C3HC4))(COG5183)
• Kegg: Link to kegg annotations (AT4G34100)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019426993.1)
• Pfam: RING-variant domain (PF12906.6)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;