| Id Trinity | TRINITY_DN50249_c1_g4_i6 |
|---|---|
| Name Transcript | Ll_transcript_498787 |
| Sequence | CTTCCGATTACCCCCACATAGGTACATCCACGTAACTTTCTAAAACAGAAATTTCATATAAGGAAAATGAAAAGATCTTATCTATGTCGACAGATTTAAT TTTCTTTTCATGTGACAATGTGAAATCATACAAGGGTAGTATTGGAAATTCACGACTCCTTTTATATATAACTGATTTCAGATAAAGAAAAACAGAGCAC AAGACAGAATTTGAAAGAGAGAAAAAAAACAGAGCAAAGAACTGTGTTTGGGAGAAGAAAACATGGAAGAGGTTGTTTTGTTCGTTGATGATTTGAGATT ACTTTCTGGGGTTTCTCGTTGTAGAATTTGTCATGAAGAAGAATTTGAGAGCGTAAAAAGCTTAGAAGCTCCTTGTGCTTGTTCTGGAACCGTTAAGTTT GCTCATAGAGATTGCATTCAGAAATGGTGCGATGAGAAAGGAAATACAGTTTGTGAAATATGTCTCCAGAAATATGAACCTGGATATACAACAGTTCCAA AGAAATGTCAAATTTCTGATGCAACAATGACCATTAGGGGAAGCTTACAAATTTCAAGAATGGAGCAAGAACCGTTAAATGCAAGAATAGAGGGTATAGT TGAAGGAATAGCAATAGAAGACCATTATTCTGAATGCACTTCTGCTGCAGATAGAAGCGCCTCTTGCTGTAGATCAATGGCTTTAACTGTAAGCATTATC TATATTATCTTTCTTTATTCATAGGAGAATGGTAAATTTTAGTAGATTTGAAATAATTTTCATGTTAGTGAACCTGGCAAGTAGCATTGCTATACATGTT TTTTATACTATAATTAATAGGTCTGAAATTGGAAACTTACTAAGGAAAAAATGATCTTGCCTTAACTTAGAAAAGAATAAGTCAAAGTTCCCAAAGTAGG CTGCAATTAGTGCCAAGTCATCAGCACATGGCTCTAAGTAAGTGCCATATTGCATGAAACTTAAGCATATTTTCCCTTCAAGGAAATAAAGGATTTTTTG ATCCCCTATCTAAACACACACTGGGAGTATTTTCTTGTTATTCAAATTAGTAAGGAAGAGCTATCTTCTATTTTTGAGTCCGGTTTTTACCTGTCGTTGT GGTGGATTTGCTGATACTGATATGAACTTAAGCAGAACTATAACTAGGAGTATTTTTTAAATTGTGATGTTAATGACATGAAAATAACTAGTAACTTTCT AATTTTGCAGTTTACACTCATCTTGCTTGTAAGACATTTATTTGAAGTGCTTTCAAATGGAATGGAAGATTACCCATTTACAATTCTTACTGTTTTTATA CTAAGGGCCAGTGGAATTATTGTACCTATGTACATAATTATTAGGACGCTCGGAGTCATTCATAAAAGTATTCAACGTCACTATCTTCAGGATTCTGACC ATGACACATCGATGTTTGATGGAGATGATGAAGAAAATGAGATATCACATGTTGCAACTTTAAGACATTAATCATAGTCATGGGTTGTTATTTGCTTTAC ATTTGTGTCTGAGCATTATGCTAATGCTCTTGGCAAATTCCAGTGTTTTGGGGCATATTTTTTTATAAAAAGAAGAAAAATGATTTAAGATCGATATGCA CCTTCTCTTACAGCATCTATAGTGTGATTATTGTCTCAACTACCCACCAAACCAAAACTGTAGAGAGAACAAGTGAATTCACCAACATGTTTCACTTGTG TTGTAAATCAAGTTGATTGTAGGACATTCTAAAACATGTCCAATGGGTGGGACAACCTTCAATTTGTTCTGAAACATGAAGTTTCATCACAGATTCCGCT ATAACTATTTGTAGGAAAAGCACACAGCCAATGAAACAGATATTTGCACAACAGATAGAAAAAGCAAGACACAGCCATCCTGTTAGGATTGATGTCAACA TAGATTGCTATTTAAGAGTTATTGCTTTTCAATGAATGAATTACCATTTTTATGATAAAACCAATGAGGACTAGCCATTTGCATTTGATATTTCTTAACG TTCAATAATAATTGTTGTTCTGAAATAGTTTACTTTGGGAACTGTTGCACAATAAAAATGTTTTCC BLAST |
| Tissue | pods |
| Gene name | LI_gene_175780; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_498787
| Blastp | Probable E3 ubiquitin ligase SUD1 from Arabidopsis with 41.67% of identity |
|---|---|
| Blastx | Probable E3 ubiquitin ligase SUD1 from Arabidopsis with 41.67% of identity |
| Eggnog | (Membrane-Associated Ring finger (C3HC4))(COG5183) |
| Kegg | Link to kegg annotations (AT4G34100) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019426993.1) |
| Pfam | RING-variant domain (PF12906.6) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |