Ll_transcript_498389

• Id Trinity: TRINITY_DN50259_c0_g2_i1
• Name Transcript: Ll_transcript_498389
• Sequence: ACGAAACAATATAGCTACGAAAGTGACATTGATAATTTGTGATGGAAAAGTGAAACAAGGAAAGGAGAATAAGGCGTAGGCAATTCCCTCCACACGTTGG TTATTACCTTATCTTCATGACGAGAACAAAAACACAGTTCCCAAATGCAACACCACCATCACTAGTGTAGTAGTAATAACCATTACATTAATCATACCAT GATGGCTACCAAATTAGCCTTCACTTTCACACACCCTCGTCCATTCATTTCTCATACTTCATTATCTTCTTCTTCTTCTTCTTCTTCTAGAGGGCCCCAC CTGCTTCATTTAAATCGCCGCCACTTATGCCTGCGCCGCCGTCAATTTATGCCGTCCCTCAAGGCCACCTCCGATCAACAAGGCAAGGTTGAAGAAGATG CTGTTGTTGATAGTAATGTGTTGCAATATTGTAGCATAGACAAAAAGGAGAAGAAAACAGTTGGTGAACTTGAGCAAGAGTTTCTTCAAGCACTCCAAGC ATTCTATTATGAGGGGAAGGCTATTATGTCAAATGAGGAATTTGATAATCTCAAGGAAGAACTCATGTGGGAAGGGAGCAGCGTAGTAATGCTAAGTTCT GATGAACAAAAATTTCTGGAAGCGTCTATGGCTTATGTTTCTGGAACTCCAATCATGAATGACAAAGAGTTCGATGATCTGAAACTGAGGTTAAAGGCCG AAGGGAGTGAAATTGTGGCTGAGGGTCCACGGTGCAGTCTTCGTAGCAGAAAGGTTTACAGCGATCTATCTGTTGACTATTTAAAGATGTTTCTGTTGAA CGTCCCTGCAACTGTGGTTGCATTAGGATTGTAAGTAACTTCATTTATGTGTATTAAGTGCATGGGTTATGATGTATTTAGTGGAAATTTTGATTCCAGC TACTGCCATGATACACAGGACATGTGGTGAAACCAAAAGTTAGAAAAAAAAATAATTGCATGCATGCAGATTTCGGAAGATTCAAGATGAAAATTATGTT TATCATTATTAAATGTTTTTCTATTTCCAAGACTAGATATTTAATGTCTTAATCATCACAATAAGGGAGTTGAAAGGGATCTTAGATATTCCAAATTTAT GCTGAGTTTTGACATATCAATTTACCTAGTGTTATATTTTACCCTTTGCTAATAATTGTATAATCCCTTATACACATACACTTGGACTAGCATTCCTGGA GCCAACTAACATGGAAGTCACTGATTGCACGTTAAGACATAACTTTGTTGCTTTTTCATTCTTTCCCCTTGTAACCTGTTAGGTTCTTCTTCCTTGATGA TGTGACTGGATTTGAGATCACATATATTCTAGAGGTATGGTCTCCTCATTTTTCCTTGTTCAAGCATTGCAAACTGGACTTAAATGCTGTTTGATCTTGA ATATATGTCACAGTATCTGATAATAGTTGCATTTATATGGACATTACTTGCCTTCTCAATATTAGTAAGCAGTTTAGCTGTATATTGTTTATATCCAAGA GTTAGAAAAAAGTCTTATACAATGCATGATTCCCTTTAAAGAGTAAAATGCAAAATATATCACCATTCAGTAACAAAATCAACCGGTTAACAAGAAGGTT ATGATGTGCATGTACTGTCTGGTTATTGTTGTAGTACATGATGACCAATTTACCATATTCATCTTTTTGAGTACCTTGTCCTGTCCCCAAACCCCGAAGA TGTAAGCACTGATATTGTGGAATTTTAGTTATTTATGAAACAACTTTTGTCTATGAGAAAACACGTCTAAGGATCAGTGAAACAAAAGCTAGGGTAATCA GATTATTTCACTTCATACACAAGAAATCGTTTCTTAGAAATTTGAATATTTTAATACAATTGATGATTATAACATGTTATGAATTTGTTGAGTGCAGCTT CCAGAGCCTTTTAGTTTCATTTTCACTTGGTTTGCCGCCGTTCCCCTCATTGTGTGGCTGGCTCAGTCACTTACAAGTGCCATTCTAAAAGATTTTTTGA TTTTGAAGGGTCCCTGTCCTAACTGTGGTACTGAAAATACCTCCTTCTTTGGGACTATACTGTCAATTTCAAGTGGAAGTTCCACCAACAATGTCAAATG TGAAAAGTAAGTATAAAACTACTACTCCAATATCCTAGCCCTACCACTCCGTCTCATTTTATATTCGTATTACTATACTGATATGATTTATGGTAGATCT TTAGTTTAACAATCCAAAATAATGTTACCTCAGCTGTGGTACTGCATTGGTGTATGATTCATCCACAAGATTGATTACATTACCAGAAGGAAGTAATGCC TAAGTGGAGGTACGTGTCTTTTATACTCTAGAATATCTCAGCTAAATCTGTTGTAGCATATATTTTTGGCCAATGAAAAGCTCCAATCTTTTTTTCCTCT CCTGTTAAAGAATCTGGAAGTGCAAGTTTTTTACTTGTAGACTGTAATACTGAAAAAATTAGCATTGTGGTGGTATCACGCCCTTTCTTTTCATGTAATT AATTAACTTTACCTTGGAATTCATCATTGCCTGTATCTCAATTTGAGACTAGTGGTGAATTGTGTGCTTGTTAGGGTTGACAATGAAAGGGGGGGCATGT GTTAATTTTCAATCCTAGCAAGCATACCTCAAATGTTTTGGTTTCAGAACACTGGTCATATGATTACTTTGTTGTGATCTGACATTTATAAACACTGGTC ACTGGTGCTTTTATAACTAGATGGCTCCCATATAGATTTCCCACATCTCACTCAACATTTGCTTGATAAGTAACACTAGTCCAAATGATGGTGTCTTCAT CCATTAAAAACGAAAACTAAGTCTTAGTCACATCGTATGAGTTCGGCTACATAGATCGAACAATGTCACAATGCTCTAGGATAATGTCTTCATATTTGGA GTAATTCTTAAGTTGTTGGGATTGATTTTTGCAACCTACAATATTAAGTCTGTGTGACATGCCTAGTGCCAAATCCTCATTGTAACTGCATCCCGATCAT TATAATATTTACTTATGTCAAACATGCAGGCATGCTTGTACCGTACTCATTGTCCCAACAATTATATGAGATCATCATGGGTGGAAGTGACTAATTTATG AAGTCAGGAAAATGTCATGGTCTAACCTAGCTAAAGGCCATGATATCATTATTCTAGCTGTTACATACCATTGGTGTGATTTCTACTGTATTATGTGTCA CTGTCATACTTGTAAGTTGTAATTAGTATGAGCTTTGTATAGCATACACAGGATTGTCCAGTGGAATAGATGAGTGGACTCTTAACACTTTCCATTTTAT ATCCAACCTAAAATTAAACAGTTTTATTGGGATGCTTATGCTAAATTGTTCCAATTTATTTCAGCTGTGCTACTTTCAAGATGAAAA
• Tissue: pods
• Gene name: LI_gene_175853;
• Additional information: details;

Expression of Ll_transcript_498389

FPKM

• PAB: 2.4
• PNAB: 1.1
• PS1: 0.8
• PS2: 0.6
• PS3: 0.7
• PW1: 0.8
• PW2: 2
• PW3: 1.9

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_498389

• Blastp: PGR5-like protein 1A, chloroplastic from Arabidopsis with 66.67% of identity
• Blastx: PGR5-like protein 1A, chloroplastic from Arabidopsis with 79.01% of identity
• Eggnog: PGR5-like protein 1A(ENOG4110C1Q)
• Kegg: Link to kegg annotations (AT4G22890)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019445088.1)
• Pfam: -
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;