Id Trinity | TRINITY_DN50259_c0_g2_i4 |
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Name Transcript | Ll_transcript_498403 |
Sequence | ACGAAACAATATAGCTACGAAAGTGACATTGATAATTTGTGATGGAAAAGTGAAACAAGGAAAGGAGAATAAGGCGTAGGCAATTCCCTCCACACGTTGG TTATTACCTTATCTTCATGACGAGAACAAAAACACAGTTCCCAAATGCAACACCACCATCACTAGTGTAGTAGTAATAACCATTACATTAATCATACCAT GATGGCTACCAAATTAGCCTTCACTTTCACACACCCTCGTCCATTCATTTCTCATACTTCATTATCTTCTTCTTCTTCTTCTTCTTCTAGAGGGCCCCAC CTGCTTCATTTAAATCGCCGCCACTTATGCCTGCGCCGCCGTCAATTTATGCCGTCCCTCAAGGCCACCTCCGATCAACAAGGCAAGGTTGAAGAAGATG CTGTTGTTGATAGTAATGTGTTGCAATATTGTAGCATAGACAAAAAGGAGAAGAAAACAGTTGGTGAACTTGAGCAAGAGTTTCTTCAAGCACTCCAAGC ATTCTATTATGAGGGGAAGGCTATTATGTCAAATGAGGAATTTGATAATCTCAAGGAAGAACTCATGTGGGAAGGGAGCAGCGTAGTAATGCTAAGTTCT GATGAACAAAAATTTCTGGAAGCGTCTATGGCTTATGTTTCTGGAACTCCAATCATGAATGACAAAGAGTTCGATGATCTGAAACTGAGGTTAAAGGTTT GCTATTTTCATCTCATCAAATCAAAGTAAAACCCTACTGTAGTAGGCAAAGAGTCTATGGCTCTGTATTGCTCAAATATGAACTAGTTGTAAGCATTACC TGAATCACATACATGTTTAGACCACCGTTAATGTTGCGTACTTGAATTTATGAAGAAAAGAGTGTGCACTCATGTGTCATGAATAGAATGAAGATTCTTT CCTTGTAATAAATATATCATTAATACTAGATTTCATTTAGGTTGCCATGGTCCTACCTGTACCGTAATATAGAACACTTATGAAAGGCACTACCTCACTA GCCTAATTAGTAAATTGACATGGTGACTCCTATACTATCAATGAGAAAAAAGTATTTGACGAGGACAAGAACAATGGTTTGAATATTATAAAACTATTTT TAATTAAAGGATAATAGTCATAGTGTTGCAGTCCACGAAACATTTTACTTTTTAGGTTTTCATTTTGGAAAGCCCACCTTGTGTGAATATGTAATTCCAG TTGTTATTTAATATTTATTGTTCATATAAAACTGAAATGCAATTAGAGTGGATTTAAAAACTATATGTTCTTCTTCCTTCTCGTGTCATTCAGCGATTTC ATGGTTCTTTTCTAGGCCGAAGGGAGTGAAATTGTGGCTGAGGGTCCACGGTGCAGTCTTCGTAGCAGAAAGGTGGGTATTCATATGGAATTTGTCCTCT AGTTTGAGTTTTGGATGTCATTTGTAGCTATGTATAACTGTTTGATGATTAAATCGATATAAAGATATTATTAGATAGAATTATAAAAGGAAGTACTTCC TGCTATCAGGAGATTTGTTTATGAATTTGATTATAAGCTGTTAAGTAGTTATATCATAAGTACTGGCTAGAGATATAACATGTTTATTTACTATAATTCA TCTTTAGGCTTCTGAGAAACAATTGATGATTGTTTTGGATCTGTTGCGCCCATTCCTTACTATTTGACGCCCTGTTACAGGTTTACAGCGATCTATCTGT TGACTATTTAAAGATGTTTCTGTTGAACGTCCCTGCAACTGTGGTTGCATTAGGATTGTAAGTAACTTCATTTATGTGTATTAAGTGCATGGGTTATGAT GTATTTAGTGGAAATTTTGATTCCAGCTACTGCCATGATACACAGGACATGTGGTGAAACCAAAAGTTAGAAAAAAAAATAATTGCATGCATGCAGATTT CGGAAGATTCAAGATGAAAATTATGTTTATCATTATTAAATGTTTTTCTATTTCCAAGACTAGATATTTAATGTCTTAATCATCACAATAAGGGAGTTGA AAGGGATCTTAGATATTCCAAATTTATGCTGAGTTTTGACATATCAATTTACCTAGTGTTATATTTTACCCTTTGCTAATAATTGTATAATCCCTTATAC ACATACACTTGGACTAGCATTCCTGGAGCCAACTAACATGGAAGTCACTGATTGCACGTTAAGACATAACTTTGTTGCTTTTTCATTCTTTCCCCTTGTA ACCTGTTAGGTTCTTCTTCCTTGATGATGTGACTGGATTTGAGATCACATATATTCTAGAGGTATGGTCTCCTCATTTTTCCTTGTTCAAGCATTGCAAA CTGGACTTAAATGCTGTTTGATCTTGAATATATGTCACAGTATCTGATAATAGTTGCATTTATATGGACATTACTTGCCTTCTCAATATTAGTAAGCAGT TTAGCTGTATATTGTTTATATCCAAGAGTTAGAAAAAAGTCTTATACAATGCATGATTCCCTTTAAAGAGTAAAATGCAAAATATATCACCATTCAGTAA CAAAATCAACCGGTTAACAAGAAGGTTATGATGTGCATGTACTGTCTGGTTATTGTTGTAGTACATGATGACCAATTTACCATATTCATCTTTTTGAGTA CCTTGTCCTGTCCCCAAACCCCGAAGATGTAAGCACTGATATTGTGGAATTTTAGTTATTTATGAAACAACTTTTGTCTATGAGAAAACACGTCTAAGGA TCAGTGAAACAAAAGCTAGGGTAATCAGATTATTTCACTTCATACACAAGAAATCGTTTCTTAGAAATTTGAATATTTTAATACAATTGATGATTATAAC ATGTTATGAATTTGTTGAGTGCAGCTTCCAGAGCCTTTTAGTTTCATTTTCACTTGGTTTGCCGCCGTTCCCCTCATTGTGTGGCTGGCTCAGTCACTTA CAAGTGCCATTCTAAAAGATTTTTTGATTTTGAAGGTATAATTTTAGTAACACTCTTTTTCGGTAATATTGAACTAGCACATATACTAACAATAATTTTT GAAGGGTCCCTGTCCTAACTGTGGTACTGAAAATACCTCCTTCTTTGGGACTATACTGTCAATTTCAAGTGGAAGTTCCACCAACAATGTCAAATGTGAA AAGTAAGTATAAAACTACTACTCCAATATCCTAGCCCTACCACTCCGTCTCATTTTATATTCGTATTACTATACTGATATGATTTATGGTAGATCTTTAG TTTAACAATCCAAAATAATGTTACCTCAGCTGTGGTACTGCATTGGTGTATGATTCATCCACAAGATTGATTACATTACCAGAAGGAAGTAATGCCTAAG TGGAGGTACGTGTCTTTTATACTCTAGAATATCTCAGCTAAATCTGTTGTAGCATATATTTTTGGCCAATGAAAAGCTCCAATCTTTTTTTCCTCTCCTG TTAAAGAATCTGGAAGTGCAAGTTTTTTACTTGTAGACTGTAATACTGAAAAAATTAGCATTGTGGTGGTATCACGCCCTTTCTTTTCATGTAATTAATT AACTTTACCTTGGAATTCATCATTGCCTGTATCTCAATTTGAGACTAGTGGTGAATTGTGTGCTTGTTAGGGTTGACAATGAAAGGGGGGGCATGTGTTA ATTTTCAATCCTAGCAAGCATACCTCAAATGTTTTGGTTTCAGAACACTGGTCATATGATTACTTTGTTGTGATCTGACATTTATAAACACTGGTCACTG GTGCTTTTATAACTAGATGGCTCCCATATAGATTTCCCACATCTCACTCAACATTTGCTTGATAAGTAACACTAGTCCAAATGATGGTGTCTTCATCCAT TAAAAACGAAAACTAAGTCTTAGTCACATCGTATGAGTTCGGCTACATAGATCGAACAATGTCACAATGCTCTAGGATAATGTCTTCATATTTGGAGTAA TTCTTAAGTTGTTGGGATTGATTTTTGCAACCTACAATATTAAGTCTGTGTGACATGCCTAGTGCCAAATCCTCATTGTAACTGCATCCCGATCATTATA ATATTTACTTATGTCAAACATGCAGGCATGCTTGTACCGTACTCATTGTCCCAACAATTATATGAGATCATCATGGGTGGAAGTGACTAATTTATGAAGT CAGGAAAATGTCATGGTCTAACCTAGCTAAAGGCCATGATATCATTATTCTAGCTGTTACATACCATTGGTGTGATTTCTACTGTATTATGTGTCACTGT CATACTTGTAAGTTGTAATTAGTATGAGCTTTGTATAGCATACACAGGATTGTCCAGTGGAATAGATGAGTGGACTCTTAACACTTTCCATTTTATATCC AACCTAAAATTAAACAGTTTTATTGGGATGCTTATGCTAAATTGTTCCAATTTATTTCAGCTGTGCTACTTTCAAGATGAAAA BLAST |
Tissue | pods |
Gene name | LI_gene_175853; |
Additional information | details; |
PAB | abscising pods |
PNAB | non-abscising pods |
PS1 | seeds stages 1-3 |
PS2 | seeds stages 4-6 |
PS3 | seeds stages 7-8 |
PW1 | pods wall stages 1-3 |
PW2 | pods wall stages 4-6 |
PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_498403
Blastp | PGR5-like protein 1A, chloroplastic from Arabidopsis with 61.14% of identity |
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Blastx | PGR5-like protein 1A, chloroplastic from Arabidopsis with 77.12% of identity |
Eggnog | PGR5-like protein 1A(ENOG4110C1Q) |
Kegg | Link to kegg annotations (AT4G22890) |
CantataDB | - |
Mirbase | - |
Ncbi protein | Link to NCBI protein (XP_019445088.1) |
Pfam | - |
Rfam | - |
GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |