| Id Trinity | TRINITY_DN50291_c0_g3_i5 |
|---|---|
| Name Transcript | Ll_transcript_496840 |
| Sequence | TTTACAAGAATAGAAAATCTCACAATGACATTAGAATTACTGGATATATATGACATTTGGAAGTTCTGATGTACTCTTGGAAATTGTCTATTTTGTGTGG TTCTTGAAATTTTGTTTTCCATTTTTTCCAGTGTTTAAATTCCTTTCTCTTTAGGTTGTGGTGATTTCTCTGTTTTCGTGACTTGTTACTGTATCCCCAA CTTAGAATATATGTTTTTAAAGATTATATTAGACACAATAGATGATCTAATTAATTGTACTTTATATTCTATTGCAGCCTACACTTCATAAACCTAGTAT AATGGCGCATGTAGTTCGTGTTTTAAAGGGGGAAAAAACAGTACGGATGCACTACGCAAATTGTAGTACTTACAATGCTGATTTTGACGGTGATGAAATT AATGTTCATTTTCCACAAGATGAAATTTCCCGATCTGAAGCCTACAATATTGTGAATGCCAACAATCAGTATGTGAAGCCTACCAGTGGGGATCCAATCA GAGCCTTGATTCAGGATCATATTGTAAGTGCTGCTCTTCTTACAAAAAGGGATACTTTTTTAAGATGTGAGGAGTTCAACCAACTTCTCTACAGTTCTGG TGTATCCATGGCTGGGATTGGCTCTTTCTGTGGCAAATCTGGGAAGAAAGTATTCATGTTAAGTACCGAGAGTGAAATGCTGATGTTTCCTCCAGCAATA TGGAAGCCAGAGCCGCTATGGACAGGAAAACAGGTTATCAGTGCGTTGCTATACTATATCACTAAAGGTTCTCCACCATTTACTGTGGAGAAGAATGCAA AAATCCCCTCTAATTTTTTCAAGACTCGAATCAGTGAGGGAAATAAATGCAGTGAAGATACATCAAGAAAGAAGGACGAGCCTGATGAGGATAAATTGTT GATATATAGAAATGATTTGGTGCGTGGTGTAGTTGATAAGGCTCAATTTGGTGACTATGGTATGGTGCATACAGTGCAAGAGCTTTATGGCTCAAATGTT GCTGGCAATCTGCTTTCAGCATTAAGTCGTTTATTCACTAACTTTTTACAGATGCATGGGTTCACATGTGGAGTAGATGATCTTCTGATAACAGAAGAAA AGGATGGTGAAAGAATGGCACAACTTGAAAGCTGCGAGGAAATTGGTGACATTGTTCATCGTGAATTTGTTGGGGTCATGGATAATGCTAGATTAGACCC AATCACACTGCAGTTGAATATTGAGAAAAAAATACGCAGTAATGGAGAAGCAGCATTAACATACTTAGATAGGAAGATGATAAGTAATCTTAACACCAGG ACAAGCTCAGGCATATTAAAGGAGTTACTATCTGAAGGAATATTGAAATCCTCTGGAAAAAATTGGATTTCTCTCATGACTACATCCGGAGCTAAGGGTA GTATGGTCAATTTTCAGCAAATCTCGTCTCATCTAGGCCAGCAAGAGTTGGAAGGAAAACGAGTTCCACGCATGGTTTCTGGAAAGACCTTGCCATGCTT TACTCCCTGGGATTGTTCTCCTAGAGCAGGAGGGTTCATTATAGATCGTTTTCTCACTGCCCTTCGCCCACAGGAATATTATTTTCATTGCATGGCTGGT CGTGAAGGATTAGTTGATACTGCAGTCAAAACATCTCGGAGTGGTTACCTACAAAGATGCCTAATGAAAAATCTTGAGTGTCTTAAAGTTAGTTATGATC ATACTGTTCGTGATTCTGATGGTTCGGTTATCCAGTTTCACTATGGAGAAGATGGTGTAGATGTCCATCAAACTAGCTTTATCACCAAGTTTGAAGCATT GTCAACTAATAAAGAATTGGTTAATAGCAACTTTTGTCGTCAGCTAGACAAATCCAGTCCTTACATTAACAAGTTGCCTGATGCTCTTGAAAGAAAAGCA AAAAAATTCATTCGTGAGAAACAGAGAAACACTGGTTCAATAAAACGATCAGACTTCTTGAAGTTGATGGAGCACAAGTATATTTCGAGTCTTGCACAGC CTGGAGAGCCAGTTGGTGTGTTAGCTTCTCAGTCTGTTGGAGAACCAGCAACACAGATGACGTAAGTTTTGCTACCCTGAACTAACACCCATGTAATTTC AGAAGTTTTGATGAACCCTACACCAGCGAGATTTGCATCAAACTGATGGTCTTATTCCAAGAATGTGACTTCAGGAATAGTCATCTTTTACATAGTGAAT AGTCCAAAAAGTTTATGCTTAAAATTCTTGAAGTGTGGAAGTCTTTTCCTAGTTGCTGGAGAGTTAGGAACAACAACTTCATACGTGTATGTGTGGATGT TGTGTTCAAGAACATTGTATTTGCAGGGCGGTGGTGTTTTTGTGTCCATGAAATTCTCAATAATTTG BLAST |
| Tissue | pods |
| Gene name | LI_gene_176089; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_496840
| Blastp | DNA-directed RNA polymerase I subunit 1 from Arabidopsis with 64.17% of identity |
|---|---|
| Blastx | DNA-directed RNA polymerase I subunit 1 from Arabidopsis with 64.53% of identity |
| Eggnog | DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (By similarity)(COG0086) |
| Kegg | Link to kegg annotations (AT3G57660) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019421167.1) |
| Pfam | RNA polymerase Rpb1, domain 2 (PF00623.19) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |