| Id Trinity | TRINITY_DN50307_c1_g2_i13 |
|---|---|
| Name Transcript | Ll_transcript_489369 |
| Sequence | CACGTTTCCTTATTCATTTGATAGAGTCACGTGACTGAACTCCACCGCACACAAATCAGCTAGAAAACGGAAAACCCTATCAACCTATCTCACCCACCAC TCTTCTTCTTCTTCTTCTCTCAATTCAATTCCTTCTCTTTCTATATATATATATATATATATATATATACCTCTCTTCGTGCATGTCCTTCATTTTCTCT TCTTCAAGGAAGAATAGCACATGGTTTATTGCCAAAGCACCTACTGCTTCATCTCTCAGTAGAGGATTTGTGGTAGCTCTTCTGATAAGAATGCTACTAA ACCGGTTTTTGGAGTCCAGAACTATCCCAATTCCCAACTCATGGAGAAAGTTTGAAGAATCTATGCTTACATTACGAATTGAAGTTTGTGAAGAAGTGCA AAGTTTCCTTTGAGTTGTAATTTCGTTGTTACTGAATCGTCTAAGTAATAAAGTTTTGGCACCAAATCCCTAGTAATTACAAGCCACATCATTTTTCGAA TGTCCGAAGCTGCTATGGCAGTTGTGAAACCTGAGGGTGATCCAGCTGCTGGAGCATGATGACGTGGCACAAAGAAGGGGAGAGGTAGAGTATACTGACC ATAACCTGGAGGAGCACCATAGAGATTGGAGGAGTTTATTCATGTCCTGTCTATGCAACCCTACCATCATGTGAGCAACCACGAAAGTCACCATATGAAA TCCTACATCTGGCTTAAAACTGCGGATGGTGCTATTCAACAAGTTGACGAAGACGTTGCCATGTTTTGCCCCATGATTTGCCGAGAAGTACTTCAGACAG GCATGGGAGCTTCCAAACTGCATGCTATATCTCTTCCACAACGGGTCAACCCTGCCATATTGGGTTTAATACTTGATTACTGCCGGTTCCACCAAGTACC AGGCCGCTCTAATAAGGAGCACAAAACTTTTGATGAGAAGTTTATTCGGATGGATACAAAGAAGTTATGTGAATTGACATCAGCTGCTGACAGCCTCCAG TTGAAGCCTTTGGTTGATCTAACCAGCCGAGCACTAGCTCGGATTATTGAAGGAAAAACTGCTGAGCAGATTCGTGAAACATTTCATTTGCCTGATGATC TCACTGAGGAGGAAAAGCTGGAGCCTCTTAGAAACATAACTGATGATCCACGTATTCGACTTCTAAACAGATTATATGCTAAAAAGAGGGAAGAATTAAA AGAGAGGAAGAAGCTGAAGAATGTGGAGGTCGAGGAGGATGAGCCTAAGGATGAGCGCTCAGTTGATGATCTTCTTTTATTCATCAATGGTGCAAATGGT GATATGAAGGGAACTAGAGTGAATAAGAATAAAAAGAAGAACAGGAGAAGGAAAGACCATGCCAAGGATCCTTCTTTACAAAACTCAAATGAAAACGACA GCAAGGAGTTGAGTCCTCTTCCTTCTGCATGTCACCATGACAATTTTGACAGTTCCTTTGTGGCCTCTCCAAGTAAAAACTCAAGGACGCAAGATCTTCC TGCTGTTAATTTTTCTCCAAAGCTTGAGTTCATTGATGGTGATCTTGATGATGATTTAGATCCTGCAATGAAGGAGGAGCTTGACAGGGAAGTAGAAGAT TTTGCACGAAGACTAAATTCAGATTGGGAAGCAAGGATGCAAGAAATTTTATGTGAAGGCCAAGACAGAAGACTAGTACCAATTTCTACGAGTACCAATG GTTCCACACACTTGCATACAGGTCTTCATCGAAGATAGTGCATCACTGGAAGATAATTTATTTTAAAGGTGACTGGAAGTTGAAGTAATCTAGAAGGATG ACAGCTTAGGGTTTGCTGTTGTCTGAATCATGGAAGCCCAAGTCGTTGTTTGAACACCATGTGAGTAATATTTGTTTGTCCCTTTTAACTTTGATACAAA AATGTACCTTTGTCTTTTACCTTTGAACATTTTGAATTTTGAGGACCAGGGAAGAGGAGCAAATATAAGGGAAAAGGTAGAAAGTGAGATACGAAAAAAA AATAGGAAATGAACAAACTCTTGGAAAGCCATTTGAGCAAAATCCGCTCATTGGCCTTGACCTTGTTTTCTTGTATTTATCTGGGTCTCAATAACTGTGG CCAGACCTCCTAAAAAATTAAATTAGTTACATTGTCATTTTTGCATTGTTTTGGCTTTTTTAGGTGGTTGAGTTATGGTTGAATTGTATTATATCTTTCA GAAACTATTTGCCGTTTTTAGCTTATTAAATATGATTATAGTTTAATTGCATGATTTCTTTAGTGGTCTAATTGATTGGTAGAGTGATGTACTGTTTTAT GTTTGGATTGGTCCCAATATAGGGGGTTAGTTACTTATTCCTTCTTGCCCAAGTTCATTTTCTCTCTTAACTTCATATCATTGCATTTCTCCCTTGTTTC ATACCGTAGTTGGCCAGCAAGGAAAGAATAGAAATTTTATGTTGCAGATAAGGACTTGACTCCAGTGCATTTGCAACTTTGTGATGCATTTATAGAATAA TGATTTGTGACTAGTTACTTCAACAAAGGATAACTTTTATTGATCCGAATATAGAGTCCAAATTCTTCAAGCTGTACTGACCAAATTCTAGAAATTGGTT TGGATAATAATAATTTGAAAGCTATTTATTAGTCTTGTCGTTTCTTGGCTGTAAAATCTTATATTCTTGTCCATTTATCTGCTCTTTCCTTTCACTCTGC CGTGTTTATGTTTTAACGTGGGGAAATACATGTTTTATAGTAAATGTTCATTATGTTACCTTAAAACTGCTATCTATGTCTGGTACTTTAATACGTGTTT TTTTAATATCACCCCAATTTCCATTTGACATCATGCCATTCAACTCGAAATGTAAAAAGCTCAAAAACGTGTAGTCACAGTGCAGAATAAACATCATCTG AAACACATTCCGGAAATAGTATTAAAAGGTGCCCCCCTACCCTTCGGTTTAAGGGCTATGAACTTATGATAAGCATTAAATGATATCTAATCAATATTAA TTAACTGTGGTTACAAATATTCCTTTTTATTTTCTGTCAAATGTTTCAAATTCACTGTAAATTCGAGGCTTCGAGCTGTTCCATCTGGTTTATTCTGCAA TTCCGTAACAACTAATATATTGCTTGATGAGAATTTTCTGAACATGTTTAGATATGCATAGCAAGCAAACTGTATTCATTAATTACCATGCCACTGATAG TAATAGAAAAAACAGGATTTATTATTTTCATTGTATTGAATTATTG BLAST |
| Tissue | pods |
| Gene name | LI_gene_176208; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_489369
| Blastp | SKP1-like protein 21 from Arabidopsis with 64.24% of identity |
|---|---|
| Blastx | SKP1-like protein 21 from Arabidopsis with 60.76% of identity |
| Eggnog | ubiquitin-dependent protein catabolic process(COG5201) |
| Kegg | Link to kegg annotations (AT3G61415) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019453187.1) |
| Pfam | Skp1 family, tetramerisation domain (PF03931.14) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |