Ll_transcript_489374

• Id Trinity: TRINITY_DN50307_c1_g2_i16
• Name Transcript: Ll_transcript_489374
• Sequence: CACGTTTCCTTATTCATTTGATAGAGTCACGTGACTGAACTCCACCGCACACAAATCAGCTAGAAAACGGAAAACCCTATCAACCTATCTCACCCACCAC TCTTCTTCTTCTTCTTCTCTCAATTCAATTCCTTCTCTTTCTATATATATATATATATATATATATATACCTCTCTTCGTGCATGTCCTTCATTTTCTCT TCTTCAAGGAAGAATAGCACATGGTTTATTGCCAAAGCACCTACTGCTTCATCTCTCAGTAGAGGATTTGTGGTAGCTCTTCTGATAAGAATGCTACTAA ACCGGTTTTTGGAGTCCAGAACTATCCCAATTCCCAACTCATGGAGAAAGTTTGAAGAATCTATGCTTACATTACGAATTGAAGTTTGTGAAGAAGTGCA AAGTTTCCTTTGAGTTGTAATTTCGTTGTTACTGAATCGTCTAAGTAATAAAGTTTTGGCACCAAATCCCTAGTAATTACAAGCCACATCATTTTTCGAA TGTCCGAAGCTGCTATGGCAGTTGTGAAACCTGAGATGAAATCCTACATCTGGCTTAAAACTGCGGATGGTGCTATTCAACAAGTTGACGAAGACGTTGC CATGTTTTGCCCCATGATTTGCCGAGAAGTACTTCAGACAGGCATGGGAGCTTCCAAACTGCATGCTATATCTCTTCCACAACGGGTCAACCCTGCCATA TTGGGTTTAATACTTGATTACTGCCGGTTCCACCAAGTACCAGGCCGCTCTAATAAGGAGCACAAAACTTTTGATGAGAAGTTTATTCGGATGGATACAA AGAAGTTATGTGAATTGACATCAGCTGCTGACAGCCTCCAGTTGAAGCCTTTGGTTGATCTAACCAGCCGAGCACTAGCTCGGATTATTGAAGGAAAAAC TGCTGAGCAGATTCGTGAAACATTTCATTTGCCTGATGATCTCACTGAGGAGGAAAAGCTGGAGCCTCTTAGAAACATAACTGATGATCCACGTATTCGA CTTCTAAACAGATTATATGCTAAAAAGAGGGAAGAATTAAAAGAGAGGAAGAAGCTGAAGAATGTGGAGGTCGAGGAGGATGAGCCTAAGGATGAGCGCT CAGTTGATGATCTTCTTTTATTCATCAATGGTGCAAATGGTGATATGAAGGGAACTAGAGTGAATAAGAATAAAAAGAAGAACAGGAGAAGGAAAGACCA TGCCAAGGATCCTTCTTTACAAAACTCAAATGAAAACGACAGCAAGGAGTTGAGTCCTCTTCCTTCTGCATGTCACCATGACAATTTTGACAGTTCCTTT GTGGCCTCTCCAAGTAAAAACTCAAGGACGCAAGATCTTCCTGCTGTTAATTTTTCTCCAAAGCTTGAGTTCATTGATGGTGATCTTGATGATGATTTAG ATCCTGCAATGAAGGAGGAGCTTGACAGGGAAGTAGAAGATTTTGCACGAAGACTAAATTCAGATTGGGAAGCAAGGATGCAAGAAATTTTATGTGAAGG CCAAGACAGAAGACTAGTACCAATTTCTACGAGTACCAATGGTTCCACACACTTGCATACAGGTCTTCATCGAAGATAGTGCATCACTGGAAGATAATTT ATTTTAAAGGTGACTGGAAGTTGAAGTAATCTAGAAGGATGACAGCTTAGGGTTTGCTGTTGTCTGAATCATGGAAGCCCAAGTCGTTGTTTGAACACCA TAGACAATCACACTTGGAATAAGCAATGTCTGAACTCCGCCGTGACCTACCAACAATAGCTACCACACTGCTGCAACACCATTCTTCCTGCTCTCTTCAT TGTTGCCATTGTCGCCCTCTAAAGATCGAAGAGCCGAAGGCATCATCATCAATGTTGGACCTATAATGCCATGGACCACCAGCATTACAACGTAGCAATG AAAGAGAAGACTAATCAATATTATAAAGTTTCAATACAAAGTTTAGACCATACTGGACTGGTATAGACTCCTGGCCTAGATAGGGATGACAAAAAACTCG ATCCGTGGTTATCCGTGGAAATACCCACGATGAGTATCCACAATAATAGCTTATGGGTAAAATGAGTTTTATGATATTCATCCCATGTGTATCC
• Tissue: pods
• Gene name: LI_gene_176208;
• Additional information: details;

Expression of Ll_transcript_489374

FPKM

• PAB: 0.1
• PNAB: 0.6
• PS1: 1
• PS2: 0.9
• PS3: 0.7
• PW1: 0
• PW2: 0.1
• PW3: 0.3

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_489374

• Blastp: SKP1-like protein 21 from Arabidopsis with 64.15% of identity
• Blastx: SKP1-like protein 21 from Arabidopsis with 60.78% of identity
• Eggnog: ubiquitin-dependent protein catabolic process(COG5201)
• Kegg: Link to kegg annotations (AT3G61415)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019453187.1)
• Pfam: Skp1 family, tetramerisation domain (PF03931.14)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;