Ll_transcript_489157

• Id Trinity: TRINITY_DN50310_c0_g4_i1
• Name Transcript: Ll_transcript_489157
• Sequence: CTCATTAGTTGTTGTGACTCTTTTTTTCATTTTATTCTTCCTCTGTGTTTACAACTTGCTGATTGTTAGTATTGTTACATTGGTGCTTTCATTCACCTTT AACAATGGCAGATAACACTCGTATGAAGGAGATGAGTACAGATATTCGAGACCTGAAACAAATTGTTAGTCTCTTAGAAAAATTGGATCAAGACAACAGT ATTCGTTTGCAAAAGATGGAAGCTACAATGGATGAGCTCAAGGAGCTGATCAAACATCACAGCACAGGAACCTCTAACACTCCATCAGAATCTAAAAAAT GGCATAAACCACCATTTCAAGTAAGGAACGTAGAAGTTGAATTTCCTAGATTTGATGGTAATGAGGTATTACGATGGATATTTAAGGCAGAACAATTTTT TGATTTCTATGATACCCCTGATGAACATAGAATCACCATTGTTGCCATTCATTTAGAAAAGGAAGTGGTTCCTTGGTTCCAAATGATTACTCGTACTCAA CCTTTTCAAACTTGGAAATCATTCACCAAGGCTTTAGAATTGGAGTTTGGCCCATCCCCTTATGATTGTCCTAGATCTACTCTATTCAAATTAACACAAC AACAATTTGTTAATGACTATTATCTAGAATTCATGGCCCTGGCAAACAGAGTTTATGGGGTGAGCACAAATGCTATGTTATATTGTTTTATCAGTGGACT TAAACCTGATATCAAAAGAGATGTGGTAGCTCAAAGTCCTTTGACATTGCTGAAAGCAGTAGCTCTAGCTAAATTGTTTGAGGAAAAATACAATCAAAAA CCAAAACACATTTACAAACCATACCCACCATACACTAACCCCCATACCCAAAAATTCACAACTCTCAACCACCACTTCTACCAACACCTCATTCTTCTTC TTCACACACTGCCAATAATCCAATCAAAAAAATGACCCAAACAGAAATGCAAATCCGTAGAGAAAAAGGCCTATGCTACACTTGTGATGAAAAATTCACT CCCAAACATAGATGTCCTAATAGGCATTTCATGATTTTACAAACAGATGATGAACTTGTACTAGTGGAGCCTATGGATGGGATACCATCAATTGAAACCT CAGAAATTCACACAGGTCACTTATCCTTTAATGCACTAAAGGGCATAAGTGGATTAGGGACCTTAAGGTTTCAAGGCAAGATCAATGGTTATCCTGTAAA GATACTCTTGGACAGCGGGAGTTCAGACAATTTTCTGCAGCCACGAATTGCACAGTTTCTGGGAGCAGCTTGGTTAGCTACACTTGGCCCTATGTTGTTG ATTATAGCTCCTTAGTTTTCAAATTATTGCTGAATGGTCAATTCATTACCATCCAGGGAGATACACCACAATTACCACAAGCCTCACAATTTCATCACAT TAAAAGAATGCACCACACTGATGCAATTGCTGAGTTGTTTGCCGTGCAAGTTCAAGAACACAATGTTGGCCAAGATGATTTTTCTGCCATCGCTCAGAAC ATGGCACTAGAGTTAGCCATATTGCTTCATACTTACAGTGAGGTTTTTAACAAACCTATTGGACTACCTCCTCAGCGATCTCAGGATCATGCCATACCTT TGTTGGATGGTAGCAACCCTGTCAAGGTTAAGCCTTATCGATATGCGCATAGCCAAAAATCTGAGATTGAAAAAATGGTGCACAACATGTTACAAGAAGG CATCATCCAGCCTAGCACGAGTCCATTCTCATCACCTATCCTTTTGGTAAAAAAGAAAGATGGTTCCTGGAGGTTTTGCACAGACTATAGAGCATTAAAT GCCATTACTATTAAGGATAGCTTTCCAATGCCAACTGTGGATGAATTATTGGATGAACTATTTGGTGCTCAATTCTTCTCTAAATTGGACTTGCGGTCTG GTTACCATCAAATACTGGTCAAACCAGAAGATAGACACAAAACTGCATTTCGAACTCATCAAGGACATTATGAGTGGTTGGTCATGCCATTTGGACTGAC TAATGCTCCAGCTACATTTCAACAATTAATGAATCAAGTGTTTCAAAGATTACCAAGGAAGTGTGTCTTGGTATTTTTTTATGACATCTTGGTGTATAGT CCAAGTTGGTCTTCACATTTGCATGATCTAGAAGTTGTTTTGCAAACATTGCAGGCCAATGTTTTGTATGCCAAACTATCCAAATGCACTTTTGGCACAC AACAGGTTGATTACTTGGGGCACACAGTTTCTAATCAAGGTGTGGCTATGGATAAGATTAAAGTGCAAGATATCTTGAAGTGGCCAGCACCTAAAAACAT CAAGCAATTCAGAGGATTTTTAGGTCTCACAGGCTATTACAGGAAGTTTATCCAAAATTATACATCTGTAGCAAATCCATTGACTAATTTGCTAAAGAAA GATGCTTTTGCATGGTCACCAGAAGCACAAACTGCCTTCATTGTATTAAAACAATTGGTTACTACTGCACCAGTGCTAGCGCTGCCCAACTTTCAACAGC CATTCACATTAGAAACAGATGCATCAGGGACTGGTGTGGGGGCAGTTTTGAGCCAAAACAAGCATCCTATTGCTTATTTTTCCAAGAAGTTGAATCCAGA ATGCAGAAACAGTCAGCATATTGTAGAGAGTTGTATGCCATTACAGAAGCTTTGGCCAAATTCAGACACTATCTATTAGGCCATCACTTTATTATCAAGA CCGATCAGAAAAGTTTGAGACATTTGAATGATCAAACTATTCAAACTCCAGAACAACAGAATTGGCTGCACAAATTTCTGGGGTATGATTTCAAAATTGA ATATAAACCAGGCAAAGATAACATCCCTGCTGATTCCCTTTCAAGATCTTGTAACACGGCTTGGTCATCCCCGACACCAACATTTTTACAAGAGTTGAAA GATGCCTTACAAGCAGATGAACATTGGAAACAACAATTAGAAACATGTGAGGCCAATCAACAACTTAATAAGTTTTTCACTCATAAGGACAAATTACTTT ATTGGAAAGGCAGGTTGGTAGTCCCTTCCACAGCAGTGCTCATCCAACAAATATTAAAGGAGTATCATAGTTCTCCCATTGGTGGTCACTCAGGAATTGC TAGAACAACGTCTAGAGTCAAATCTGAATTCTATTGGCCTAATATGAAACAAGACATTCAACAATTTGTACAGAATTGCATCATTTGCCAACAAGCTAAA CACCTGCACTCACATCCTAGTGGGCTGTTACAACCATTGCCAATTCCTAATCAGATTTGGGAAGATATTGCAATGTAGTTTATAACAGGCTATACAGTGA TTTTTGTGGTGATAGACCGATTGTCTAAGTATGCTCATTTCCATCCGTTAAAAACTGATTATACAAGCATGCAAGTTGCTGAAATCTTCATGGCTTCTAT AGTTAAGTTACATGGTATGCCAAAATCTATTTTGAGTGATAGAGATAAAGTGTTCACTAGTAAATTCTGGCAACATTTGTTCAAGATGCAAGGCACAACA TTGGCAATGAGCTCAGCATATCATCCACAGACTGATGGCCAAACTGAGGTGCTTAACAAATGCTTGGAAATGTACTTGAGATGATTCACCTTTCAAGCTC CAAAGACATAGGTTACTGCATTACCATGGACTGAATATTGATACAATACATCTTACCATAATAGCTTGAAAATGACACCATTTCAGGTAGTTTATGGACG AGAACCGCCTACCTTAACTAGATACAACTTCAATAGCTCGGATAGCTCAAGTATCCAGAATACTCTGCAAGAACGGGATATGCTATTAACTCAATTAAAG AATAATCTGCACCGAGCTCAGCAACATATGAAAACTCAGGCTGATAAACAAAGGCTTGACATGCATTTTAGTGTTGGACAGAAGGTTTGGGTGAAGCTCC AACCTTACAGACAACACTCAGTGAGCCTTAGGAAGAATCATAAACTTGGCATGAAGTATTTTGGTCCCTTCACCATCTTAGAAATGATTGGTTCAGTTGC ATACAAATTACATCTTCCTGATAATGCACGATTTCATTCTGTTTTTCATGTGTCACAATTGAAAGCTTTTAAAGGAGATGAAACAATTCCACACATTCCT CTGCCTTTACTCATTGACACTAAAGGTCCAAAGTTACAACTTGTCCATGTTCTGAACCAAAGAACTATTCTGAAAGGAGGCCACCGTGTGTTGCAAGTGC TAATTCAATGGGAAGGACAAGATCATTCTAAAGCAACTTGGGAAGATTTTGATACAATTGTTAACCATTATCCTACATTCAACCTTGAGGACAAGGTTGT CTTTAATGGGGGAAGTAATGTAACAGACCAGGATAATGAGCACTCCCAAAAGAAGAATAAGACAAAGTTTGTTAGAGCAAATGGACATGTGGCAACCAGG CACAACTCACATAAAAAACA
• Tissue: pods
• Gene name: LI_gene_176245;
• Additional information: details;

Expression of Ll_transcript_489157

FPKM

• PAB: 0.1
• PNAB: 3.1
• PS1: 3.5
• PS2: 2
• PS3: 2.7
• PW1: 2.5
• PW2: 3.4
• PW3: 3.1

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_489157

• Blastp: Retrovirus-related Pol polyprotein from transposon 17.6 from Sophophora with 44.95% of identity
• Blastx: Transposon Tf2-6 polyprotein from Schizosaccharomyces with 31.22% of identity
• Eggnog: -
• Kegg: -
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_015969943.1)
• Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) (PF00078.26)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;