| Id Trinity | TRINITY_DN50311_c0_g1_i1 |
|---|---|
| Name Transcript | Ll_transcript_488894 |
| Sequence | CCACCCCAAACAAAACAACCCCCCCCCCCCCCCCCCTCTCTCTCTCTCTCTCTCTCATCTTACTCATGCGTTATATTTCTATTCAAAAATCTCTTTTTTC ATCAAACCCTAACCCTGCATCAACATCTTGTAAGTGTTCTTGTTGTTTCTGCACATACCCAGAAGCTTAAAACCGATCAAAGTCCAAACTTGTTTGTGAA TTCGAGTCGATCCATGGATTCTAAATCGGGTTTAACTCTGGGGTTGAGTTCACACATGTCAACCCCATCAACCCCTTCTGTTCACACGGTTCTGTTCAAG CGCGAATCATCATCAGCATCATCACATTCAGAAGAAAACAACTTTGAACAATTACAAGAGGATAGTGAAACTATCAATTTCATGGGTCAAGGTCTCTCTT TGAAGAGAAGCATAGAGTCACAACAATCATGTTTCCCTTCAAAACGTGTCCATGTTGAAAAGACTATGGAGGCAAAGAGAGATTGGGTTCAAGGTTGGGG GAACCAACCACTTGCAGTTGCAGACCCAGAAATCTTCAAAATCATGGAGAAAGAGAAAAAAAGACAATTCAAAGGAATTGAGTTAATTGCTTCAGAGAAT TTTGTGTGCAAAGCAGTGATGGAAGCACTAGGTAGCCCTTTAACTAATAAGTACTCTGAGGGAATGCCAGGTGCAAAGTACTATACTGGTAATCACTACA TTGATCAAATTGAGTTTCTATGTTGTAAACGTGCATTGGAGGCTTTTGATGTTGATTCTCAGAAATGGGGTGTTAATGTTCAACCTTATTCATGTACTTC TGCTAATTTTGCTGTATACACTGCACTTTTGCATGCCGGGGACAGGATTATGGGTTTGGATTCACCATCTGGTGGACATTTGAGTCATGGGTATTATACT ATGGGTGGGAAGAAGGTTTCGGCTGCTTCGATTTTCTTTGAGACTTTGCCTTACAAGGTTAATCCTCAAACTGGGTACATTGATTATGAAAAGCTTGAGG ATAAAGCACTTGATTTTAGGCCCAAGATACTTATTTGTGGCGGGAGTTCGTATCCCAGAGAATGGGATTATGTCAGGTTCAGGCAGATTGCTGATAAATG TGGTGCAGTTTTGATGTGTGACATGGCTCATATCAGTGGTCTTGTGGCTGCTAAGGAAGCAGCTAGTCCCTTTGATTACTGTGATATCATTACCTCAACA ACCCACAAAAGCCTCAGAGGTCCAAGGGGAGGTATCATCTTTTATAGAAGAGGGCCAAAACCAAGGAAGCAAGGCTTTGTTCTTAATCACGGAGACAATA GTAATTATGATTTTGAGGAGAAGATTAACTTTGCTGTATATCCATCATTACAAGGAGGTCCTCACAACAATCACATTGCTGCTCTTGCCATAGCTTTAAA GGAAGTTGCAACTCCAGGTTACAAAGCATACATGCAGCAAGTGAAGAAAAATGCACAGGCATTAGCATCTGCCCTGTTGAAAAGAAAATGCCGATTGGTG ACTGATGGGACTGACAATCATCTGTTGCTCTGGGATCTAACTGCACTTGGCTTACTAGGTATATTTTCAAGCTTCTCTGTCTTTTGCAAATGTATATCAG TTACACCGAATTTGGAATGAGTACCGTTTTCCCCAAATAACGCCTAGTTATTATTTGGTAACTGGTAGTTGCATATGATGCAGCAACACAGATGACTTAA ACTATTCACAGGAGAATATAAGGAAAACCCACCCCACCCCTGGTGTGATTGGGGGATATTACGCCTGATCTGAACATCAACTTTGATTACTCCCTACATG AACTTCATAGTTGTTATAGATAAACTGAATTGGATCCTTATTTTCTATAAACAATTTTCCCCATAACTCTTTTCTAATCTAACCTCCTTCATTGATGTTA AACAAGAACTAGGATTAAGAAGTTAGGTAAGATTTTACAACTTTAGAATAAGTTCAGCGCAAGTGCTATATTTGGAGAGGAGTGCTTGCAAGCTGTACAG TGATAAAGTTTTGTACCTATACCCTTCCTAGAGTGTGAGTCTCGAGCATCAGGCCACCCTTTAATTGTTACATGAATTTGCAACTGGAGTTTAATAAGGG AAGTTTCCTTTTGCAAATTCAAGATATTTGTTTCAGGGATCTAGTCGTTTGCTTTACAAGATTTTAGAGTAATCCAAAGATAGGAAAGGGAGGGGGCAGG GCAGAAAATCCGAGTAGAGAAGAACTAGAATATAAAGTGCAATCCAGTGCTGTTTTTGACCACTGAGTAGTAAAGATGCTATTCTATTTGTTATACTTTG TATTTCAAATTTTGAACTCCAGTCTGCATGTTTTGTGTGTGTCACTTGTGATTTCTGATAATCATTTTACATTCTGTTGTAATGCAGACAGAAACTATGA GAAGGTCTGTGAGGCGTGTCACATCACTCTCAACAAATGTGCCATCTATGGTTCTATTTCTACTGGGGGAGTTAGAATCGGCACTCCCGCAATGACATCA AGGGGCTGTATAGAGGAAGATTTTGAGACCATAGCTGATTTTCTTCTGAGGGCAGCTCAGATTACCAGCATTGTACAAAGGGAACATGGGAAATCATGCA AAGACTTTCTCAAGGGTCTTCAGAATAACAAAGATCTTTCTGAACTCAGAAATAGGGTTGAAACATTTGCTTCCCAGTTTGCAATGCCGGGGTTCGATAA TTGATTTGCAACTGCAAAGGAAGCACAGCCATACATCCTTGACATCAATATATCTTGGCTCAAGTTCCACCTCCACCTTTTGTTGAGTTATTTTTGCATG GTAACTTGTCGGTTTTTTGGCCCCTTATCCAGTTAACTCATGTAGATTATAGATGCAAATAGAACTCAGATCAAAATGCCACGTTCATACTTATTACATT TGAGACATTGTACAAATTATTCAAGGGTGATACTTATACCGGTCTCTTCAACCACAATTTGTGGCTATATTTGTTTATGGAGAACTTCAGTAATTAAGTT ACACTTTACTGCAGAAATACATAAAAGAAAAGTGTTACTATTATTCACTGCTAGTCTTAACATATTATTTATAATGTGCATGACATTATTCTATAGTCAT CACTAGATATGTATTTCTGTTTGTTCATGTTTATAGAGCTTAATGCATGGGATTTTAAATAGGCTTGTATAATGTAGCAATTGGAATTAAATTTTGAGAA TACAACAAATATTTTGCCAGTGTAATATTTGTATACTGTTAGAATGAAAATTTATATACATGCAGT BLAST |
| Tissue | pods |
| Gene name | LI_gene_176250; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_488894
| Blastp | Serine hydroxymethyltransferase 6 from Arabidopsis with 69.77% of identity |
|---|---|
| Blastx | Serine hydroxymethyltransferase 6 from Arabidopsis with 71.5% of identity |
| Eggnog | Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism (By similarity)(COG0112) |
| Kegg | Link to kegg annotations (AT1G22020) |
| CantataDB | Link to cantataDB annotations (CNT0002904) |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019417396.1) |
| Pfam | Serine hydroxymethyltransferase (PF00464.18) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |