Ll_transcript_488898

• Id Trinity: TRINITY_DN50311_c0_g1_i3
• Name Transcript: Ll_transcript_488898
• Sequence: CCACCCCAAACAAAACAACCCCCCCCCCCCCCCCCCTCTCTCTCTCTCTCTCTCTCATCTTACTCATGCGTTATATTTCTATTCAAAAATCTCTTTTTTC ATCAAACCCTAACCCTGCATCAACATCTTGTAAGTGTTCTTGTTGTTTCTGCACATACCCAGAAGCTTAAAACCGATCAAAGTCCAAACTTGTTTGTGAA TTCGAGTCGATCCATGGATTCTAAATCGGGTTTAACTCTGGGGTTGAGTTCACACATGTCAACCCCATCAACCCCTTCTGTTCACACGGTTCTGTTCAAG CGCGAATCATCATCAGCATCATCACATTCAGAAGAAAACAACTTTGAACAATTACAAGAGGATAGTGAAACTATCAATTTCATGGGTCAAGGTCTCTCTT TGAAGAGAAGCATAGAGTCACAACAATCATGTTTCCCTTCAAAACGTGTCCATGTTGAAAAGACTATGGAGGCAAAGAGAGATTGGGTTCAAGGTTGGGG GAACCAACCACTTGCAGTTGCAGACCCAGAAATCTTCAAAATCATGGAGAAAGAGAAAAAAAGACAATTCAAAGGAATTGAGTTAATTGCTTCAGAGAAT TTTGTGTGCAAAGCAGTGATGGAAGCACTAGGTAGCCCTTTAACTAATAAGTACTCTGAGGGAATGCCAGGTGCAAAGTACTATACTGGTAATCACTACA TTGATCAAATTGAGTTTCTATGTTGTAAACGTGCATTGGAGGCTTTTGATGTTGATTCTCAGAAATGGGGTGTTAATGTTCAACCTTATTCATGTACTTC TGCTAATTTTGCTGTATACACTGCACTTTTGCATGCCGGGGACAGGATTATGGGTTTGGATTCACCATCTGGTGGACATTTGAGTCATGGGTATTATACT ATGGGTGGGAAGAAGGTTTCGGCTGCTTCGATTTTCTTTGAGACTTTGCCTTACAAGGTTAATCCTCAAACTGGGTACATTGATTATGAAAAGCTTGAGG ATAAAGCACTTGATTTTAGGCCCAAGATACTTATTTGTGGCGGGAGTTCGTATCCCAGAGAATGGGATTATGTCAGGTTCAGGCAGATTGCTGATAAATG TGGTGCAGTTTTGATGTGTGACATGGCTCATATCAGTGGTCTTGTGGCTGCTAAGGAAGCAGCTAGTCCCTTTGATTACTGTGATATCATTACCTCAACA ACCCACAAAAGCCTCAGAGGTCCAAGGGGAGGTATCATCTTTTATAGAAGAGGGCCAAAACCAAGGAAGCAAGGCTTTGTTCTTAATCACGGAGACAATA GTAATTATGATTTTGAGGAGAAGATTAACTTTGCTGTATATCCATCATTACAAGGAGGTCCTCACAACAATCACATTGCTGCTCTTGCCATAGCTTTAAA GGAAGTTGCAACTCCAGGTTACAAAGCATACATGCAGCAAGTGAAGAAAAATGCACAGGCATTAGCATCTGCCCTGTTGAAAAGAAAATGCCGATTGGTG ACTGATGGGACTGACAATCATCTGTTGCTCTGGGATCTAACTGCACTTGGCTTACTAGGTATATTTTCAAGCTTCTCTGTCTTTTGCAAATGTATATCAG TTACACCGAATTTGGAATGAGTACCGTTTTCCCCAAATAACGCCTAGTTATTATTTGGTAACTGGTAGTTGCATATGATGCAGCAACACAGATGACTTAA ACTATTCACAGGAGAATATAAGGAAAACCCACCCCACCCCTGGTGTGATTGGGGGATATTACGCCTGATCTGAACATCAACTTTGATTACTCCCTACATG AACTTCATAGTTGTTATAGATAAACTGAATTGGATCCTTATTTTCTATAAACAATTTTCCCCATAACTCTTTTCTAATCTAACCTCCTTCATTGATGTTA AACAAGAACTAGGATTAAGAAGTTAGGTAAGATTTTACAACTTTAGAATAAGTTCAGCGCAAGTGCTATATTTGGAGAGGAGTGCTTGCAAGCTGTACAG TGATAAAGTTTTGTACCTATACCCTTCCTAGAGTGTGAGTCTCGAGCATCAGGCCACCCTTTAATTGTTACATGAATTTGCAACTGGAGTTTAATAAGGG AAGTTTCCTTTTGCAAATTCAAGATATTTGTTTCAGGGATCTAGTCGTTTGCTTTACAAGATTTTAGAGTAATCCAAAGATAGGAAAGGGAGGGGGCAGG GCAGAAAATCCGAGTAGAGAAGAACTAGAATATAAAGTGCAATCCAGTGCTGTTTTTGACCACTGAGTAGTAAAGATGCTATTCTATTTGTTATACTTTG TATTTCAAATTTTGAACTCCAGTCTGCATGTTTTGTGTGTGTCACTTGTGATTTCTGATAATCATTTTACATTCTGTTGTAATGCAGACAGAAACTATGA GAAGGTCTGTGAGGCGTGTCACATCACTCTCAACAAATGTGCCATCTATGGTTCTATTTCTACTGGGGGAGTTAGAATCGGTGAGTAGCTCTCGTATAGT ATGTCCGAAAGTTATGGTTTTGGCATAATTTCTTTGTCTTTTTTTTGGTTGAATATGTTTGTTGTCGCAACAAATATCATATGTTTTCCATACCATTCAA GTTAGGATTTAATCATCTATGCTCTGCCTATGATTCTTCATGGGAGCAGCAAGTTTTTGAATCAACCCTCTTAATGTACCATAGTAGAAAATGGTTCATC CAATCTCATTTTCTAGGTAATTGATGGAAAGAAAGAAAATATGTATTTATGTGCCTATCCATTCCTGGTGCAGGAGGCATAGATAATCCATGTATTTTTT AAATTTACAATTACTCTTGGATTTCATGATGTACATAATTTCCATTTAAAATAAATTACTATTCGGTCTTCTGAATGCCTTTATGTTTTATTCTTGTTCT CAAGTCCCTTAATTTCGTCGGATTTCAGGCACTCCCGCAATGACATCAAGGGGCTGTATAGAGGAAGATTTTGAGACCATAGCTGATTTTCTTCTGAGGG CAGCTCAGATTACCAGCATTGTACAAAGGGAACATGGGAAATCATGCAAAGACTTTCTCAAGGGTCTTCAGAATAACAAAGATCTTTCTGAACTCAGAAA TAGGGTTGAAACATTTGCTTCCCAGTTTGCAATGCCGGGGTTCGATAATTGATTTGCAACTGCAAAGGAAGCACAGCCATACATCCTTGACATCAATATA TCTTGGCTCAAGTTCCACCTCCACCTTTTGTTGAGTTATTTTTGCATGGTAACTTGTCGGTTTTTTGGCCCCTTATCCAGTTAACTCATGTAGATTATAG ATGCAAATAGAACTCAGATCAAAATGCCACGTTCATACTTATTACATTTGAGACATTGTACAAATTATTCAAGGGTGATACTTATACCGGTCTCTTCAAC CACAATTTGTGGCTATATTTGTTTATGGAGAACTTCAGTAATTAAGTTACACTTTACTGCAGAAATACATAAAAGAAAAGTGTTACTATTATTCACTGCT AGTCTTAACATATTATTTATAATGTGCATGACATTATTCTATAGTCATCACTAGATATGTATTTCTGTTTGTTCATGTTTATAGAGCTTAATGCATGGGA TTTTAAATAGGCTTGTATAATGTAGCAATTGGAATTAAATTTTGAGAATACAACAAATATTTTGCCAGTGTAATATTTGTATACTGTTAGAATGAAAATT TATATACATGCAGT
• Tissue: pods
• Gene name: LI_gene_176250;
• Additional information: details;

Expression of Ll_transcript_488898

FPKM

• PAB: 2
• PNAB: 0.2
• PS1: 0.5
• PS2: 1.5
• PS3: 2.4
• PW1: 0.2
• PW2: 0.3
• PW3: 1.3

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_488898

• Blastp: Serine hydroxymethyltransferase 6 from Arabidopsis with 69.77% of identity
• Blastx: Serine hydroxymethyltransferase 6 from Arabidopsis with 71.5% of identity
• Eggnog: Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism (By similarity)(COG0112)
• Kegg: Link to kegg annotations (AT1G22020)
• CantataDB: Link to cantataDB annotations (CNT0002904)
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019417396.1)
• Pfam: Serine hydroxymethyltransferase (PF00464.18)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;