| Id Trinity | TRINITY_DN50312_c5_g4_i3 |
|---|---|
| Name Transcript | Ll_transcript_489428 |
| Sequence | CAAAGTCACACACAATAATTCTAATATATTAATCTCAATACCCTTTTTCTCATTCTTCACTATTTTTGTTTGCTTGATCTATTTGATTTGAGTGAGATGC AAGATAATGAAGAAATCCCTTCAACACCTGCCACACCAGGTACACCTGGTGCTCCTCTTTTTGGTGGGTTCAAGTCTGAGAGAAATAATAATAACAATGG AACCATTCATGCTATTGCTAAGAAATCCCTATTGAAGAGTTTCAAATGTTTTAGTGTTCAAGGTTTGGACTTAGAAGATGGTGCTTTACCCAAAGTCTCT TGCTCTTTGCCTCCCCCTCCTGTCCCTCTTGCAAGAAAGGTAGGAGCTGAGTTTATAGGAACATTCATTCTGATGTTTGTTGGAACAGCAGCAGCAATAG TGAACCAAAAGACACATGGGTCAGAGACACTAATAGGATGTGCTGCAACAACAGGTCTTGGTGTTATGGTCATAATCCTCTCAACTGGTCACATCTCTGG TGCTCATCTTAACCCTGCTGTCACCATTTCATTTGCTGCTTTGAAGCACTTCCCTTGGAAGAATGTACCTACATATATTGGTGCACAAGTATTGGCATCA ATATGTGCAGCATTTGCACTGAAAGGGATATATCATCCTTTCATGAATGGAGGAGTCACTGTTCCAACAGTGGGATATGGTCAAGCTTTTGCCTTAGAAT TCATTATCACTTTTAATCTCATGTTCGTTGTCACTGCAGTTGCTACCGACACTAGAGCTGTGAGTATCTTATCCCATATTTAATATTTTAGATTACACTC CACAACCGTATCTATGTCGAGACATTTCCGAGAGTCTCTATAATGACATCTTAATCATAATTACAAGAGTAAATTATATTGACACCCCCTGAGTTTTAGT GAAATTATACAAATTTTTCCTCTTATTTTTGCACTTACACAAACTACTCCTAATTGTATATATACATTACACTAACCACCCCTAAAAAAGAGACAAGTGT AATTTCTTAAACAAAAAATAGTGATCAATGTAATTAAGTTAAACAAAATATGATATATTGTGAAGACAAATTAAAATGCAATGAGATTCAATATCTATTC ATTATTTTGGTTAGTTACAATA BLAST |
| Tissue | pods |
| Gene name | LI_gene_176266; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_489428
| Blastp | Aquaporin NIP6-1 from Arabidopsis with 71.98% of identity |
|---|---|
| Blastx | Aquaporin NIP6-1 from Arabidopsis with 77.63% of identity |
| Eggnog | Channel that permits osmotically driven movement of water in both directions. It is involved in the osmoregulation and in the maintenance of cell turgor during volume expansion in rapidly growing cells. It mediates rapid entry or exit of water in response to abrupt changes in osmolarity (By similarity)(COG0580) |
| Kegg | Link to kegg annotations (AT1G80760) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019443330.1) |
| Pfam | Major intrinsic protein (PF00230.19) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |