Ll_transcript_488392

• Id Trinity: TRINITY_DN50313_c2_g7_i2
• Name Transcript: Ll_transcript_488392
• Sequence: TGGTGGATGAAGAAGGGGTCGGTGACCCTTTTCCTGTGGGTATGCGTGTTCTTGCTGTTGATGATGACCCAATTTGCCTCAGAGTTTTGGAGACCTTGCT ACGCAAATGCCAGTATCATGTTACTACAACTAATCAGGCAATTGAGGCTCTGAGAATGTTGAGGGAAAATAGAGATAACTTTGACCTTGTCATTAGTGAT GTGAATATGCCAGACATTGATGGATTTAAGCTCCTTGAGTTGGTGGGGCTTGAAATGGACTTACCTGTCATCATGTTGTCAGCACACAGTGATACAAAGC TGGTGATGAAAGGTGTTGCACACGGTGCATGTGACTATTTGCTTAAACCTGTTCGAATTGAGGAGCTGAAGAACATATGGCAACATGTATTGCGGAGAAA AAAATTCGATGGCGGGGATCAGCCTCCGAAGGAGGAGAGGGCTCCTCCTAATATTGCTAGGGAAGGTAGTCAAGGAATCGTATCAGAAAGCAGTGCAGAT CAAAATAAAGCTCTCGGTAAGAGAAGGAAGGAGCAAAGTGAGGATGAAGATGAAGATCTCGATGTGGACGGAGAAGAGATTGATGACCCCTCAGCACAAA AGAAGCCTCGTGTAGTTTGGTCAGTTGAGCTGCATAGAAAATTTGTCGCTGCAGTTAATCAGTTGGGCCTTGAAAAGGCTGTTCCAAAGAAAATACTTGA CCTTATGAATGTTGAAGGGCTTACACGGGAAAACGTGGCAAGTCATCTGCAGAAATATAGACTCTATCTGAGAAAGGCAACCCAACAAGCTAGTATGGTT GCTGCATTTGGTGGTAGCGATTCTTACCTGCGGATGGGTTCAATAGATGGATACGAAGATTTTTGCGCCTCGTCTGGATCAGGAAGGATCTCAACCACTA CATTACCATCATACGCATCAAATGGAATTTTCGGTAGGCTGAATTCCCCAGCTGGCTTGAACATGAGAACAATTAGTTCTTCTGCACTAATCCGGTCCGT TCAGCCTCAAAATATTAACAGCGCGTTAAGCACAGTTGGAAACATTCCGCCATCCATGTATCCCTCAAATCAAAGCTCAGGTTTATTGCATGGCATACCG ACATCAATTGAGCTTACTCCGTCTAAACAAAGCAACTGCGCAACGGGTATAACACAGTTAGGTCAAGTTGATCCGAGTGGTTTTACAATCGCTTCTGGTT TCCAAGACAATAGGGTTATTGTTGGTAGTGCAGATAATTCTCTACCTTGTGTCTCGAATAATCATTTGATGCTACAAGGAAACTCACACCAAATGCATTC AGGAGCATTTAGAAATCAGTCTTCTGTTAGAGCAGCTCCTCTGAGCACTGAATCTTTTGATGTCGGGTTATGTGGTTCCTCTAATTTGCTGGGTTATAAT CGGTGTAATGAAAACTGGCAGAGTGCAGCTCAGTTGTCGAAATTTCCTGCCAATTCTTTGCCGTTGTGTGAGGCTTTCAATAATGACGAACTGCATCCCG CTGGCATAAATGTTTCCAACTCGAATACTCCTATGGGTAACAGTTCAGTTGATTTCTCATCCAGAATGGCGAATTCTGTTCCATTAGAGAATTCTAGAAG TGAGATGCAAGGTCAAGAAGGCTTCATTGGGAATATTCTACAGCCTTCATCAAGTTACACACCACGACAAAGATGGGAAGAACATATACTGGAGTATAAG CAAAACATGAGTCGTCCTTTCGATTCCGTAAATTCACAGGTTTCTCATATTGGAGTGACGAATTCCACAGGGCATAGTTTAAACCAAAACAATTCAATTT GCAGCAATAGAATTGACACATCTTTGTTTGGCCAACTAAATGGGGCTTCCCCGTCTATGTACCGGTGCAATGAAGCCGAGAAACTTTCTTCGGATACACG ATTCAAGTCAAATGATGCCTACATTTTGGAGCAAATGAAGTCCCAAGATGGATTTATTCAGAATAATTACGGGACCTTGGATGAGATAATGGGTGCAATG GTCAAAAGGGTATGATTAAATAACCTACTTTAATTTGTTCCGTTCTCGAGAAGATAATGAGTTTTATCTCTCTCCCTCTTTAAATGTTTTTGCTACTGCT ACGGTATCTTGAAATAATCGAATTGCAACGCTTCTAGACGCTTAAATGTTAGCATAGTCACTTTTTTCGAGTATTGGTTGTTCCTTTTAGATGCTTGTGT TAATGGTTGTTCTGATTTTAAGCATTTTCGGCACCTGTTACATATTTTTCACTAGATCTTACTACAAAGAACAAAATTTAATTGTGCAAGTCATTTTATT TTGAAGCTTTTGCTGCTATTCGAATGATTTAATGATGCAAAGCACGGTAAGTGAAGTCGAACAATATCAATTTAGTAAACAGATCATTTTACCAAGTATA GGAAGATTCTGCAGATATAAATGCTTTTTCATTCGAAAATAGGAAATCACACTATATCATTGGTTGAATGGAGTAGTTCTTCATAACTGATACATATCAT TGTTGAGGATGTGATGGTTTCACTTATGTATTAGATTCATAATCTTTATTTTCTTTGTTACATAAACCTCCCTAAGAATTCATATTTTATTAAGATGTGT GTATACATTTGTTTACAAATAACTTACTATGCCTTGTAATTTACCAACGAGTGTTGGTTCAAGTGGTACATGCTTGATTTCCCTTAAGTAAGGTCTCGGT TTCGAATCTTATGGATGGAAAAAATGTCCGTTGAGAGAGTTAGTCTCACATATCTGTGGATGTTCCCAACTT
• Tissue: pods
• Gene name: LI_gene_176282;
• Additional information: details;

Expression of Ll_transcript_488392

FPKM

• PAB: 0.9
• PNAB: 0.7
• PS1: 1
• PS2: 0.5
• PS3: 0.9
• PW1: 0.6
• PW2: 0.3
• PW3: 0.3

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_488392

• Blastp: Two-component response regulator ORR23 from Oryza sativa with 46.91% of identity
• Blastx: Two-component response regulator ORR23 from Oryza sativa with 46.73% of identity
• Eggnog: Transcription factor(COG5641)
• Kegg: Link to kegg annotations (4331008)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019415734.1)
• Pfam: Response regulator receiver domain (PF00072.23)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;