Ll_transcript_490820

• Id Trinity: TRINITY_DN50319_c3_g2_i2
• Name Transcript: Ll_transcript_490820
• Sequence: AGATGGTCTATATATAGCCACTTCCTTTCTTTCCTTGGTTACAAGAAAGCATTTTCATGATAGTCATTTCCTTTCTTTGCTTGGTTACAAGAAAGTCTTT TCAATATCATTTTCTTTTAGCCAATACTCAATAAACCTCCACCTTGGCTAAAAGACTATCATATTTATACTCTTGCTACTCTTCTTCATGCCCACTAGAG ATTCTGGACATTAATCAAGCCCAAACAATGTCTAAACTTGATAGCTGGAACTGACTTCGTCATCATGTCTGCCAGATTATCTATAGTGGGTTTTTTCTCC ACTCTAACAATTCTTTTCTCCACGATATCTCTGCTGAAGTGCATCCAAACATCAATATGTTTAGTTCTTTCATGATACATTGGATTCTTTGTCAGATGTA TAGCACTTTGACTATAAAGTAGATGATTGTTTCTTCGACTTATATACCTAACTCTTCAATTAGTCCTTTTTCCCAGATGACTTCATTTACAACTTCTATT ACTTTAATGTACTCTGCTTCAGTTGTAGACAAGACAACAATTGATTGTAGTGTTGCTTTCCAACTAATGGTACAATCGCACAGTGTAAAGAATGCCGTTT TGACATCTAATTGCTCAAGTTCTAGATCAAATTGAGCTACAACAACAAGTAGGATGCGAATAGAGCTATGTTTTACCACAAGAGAGAAATCTTCATTGAA ATCAACACCTTCTCTTTTGTGTAAAATCTTTGGCCACTAATCGTGCTTTGAGTCTTGCATCTTCAACCCCAGGGATTCCTTCCTTCTTATTGAAGACCCA TTTACATCCAACAATCTTTTGAGCCTTCGGTCTCTTCATAAGAATCCAAGTATGTTTCTTATGTAGAGACTCAATTTCCTCTGTCATGACATAAATCCAT TTGGAAGCTTCTTTGTTTTTGAGAGCTTCTTCATATGACTGTGATTCACAATTATTGATATCATCAACAACATTTAGAGTATACGACACCATATCAGCAT AGCCATACTTCTCAGGAGGTTTTATATGTCTCATTTGTCTATCCCTAGCCAATTGATAATACTGCAATTGGGAGGTATCAATATCAGCACATGCATCATG GACATCTTCTTGATCAAATGTCTTATCTTTTGTTGTCTCCACCTCAAACTCCACTTTCTCCAAGATATTGGGATCTTTGTTTTCACTTGATGACTCCTCA TGAGGCTTTAACACTTCATCTTCGTTAAAAGTAACATCTATGCTAATAATGCATTTTCTTTTCTCTGGCCACCATAACTTATATCCTTTCACACCATCAG GATATCCAAGAAAAATGTATTTCAGTGCTCTTGCATCAAGTTTCCCTTCTTTGTTATGAACATATGCAGGGCAACCAATTATCCTCAAATTTTTATAATT TGAAGGAATATCAGACCACATATCTTCTGGAGTTTTGAAACTAATAGTCGTTGATGGACATTTGTTGATCAAGTAACAAGCTGTACTGACAGCTTCAGCT CAAAATTCTTTTGGCAATCCAACATTTGACAACATACACCTTGTTCGTTCAAGTAAGATTTTGTTCATTCATTCTGCAAGCCCATTTTGTTGTGGAGTGT GCCTCACGGTATAATGTCTGACAATACCGTGATCCTTGCAAAAATTTCTGAATTCTCCGCTACAGAATTCTAGACCATTATCAATTCTTAGTCTCTTGAT CTTCCTTCCAGTTTGCTTTTCAATCAAGGTTTCCCAATGTTTGAACTTGGAAAAAACTTTACTTTTGTGTTTCAAAATGAAGATCCAAACCTTCCTTAAA TAATCATTGATGAGTGTTAACATATATCTGCTACCACCATGAGAAGACACTTGGGAAGGACCCCACAAGTCAGAATGTACATAATCCAATGTGCCTTTTG TTCGATGAACTCCAACATTAAATTTTATTTGACATTGCTTTCCGAAAACACAATGTTCACAGAAGTCTATCTTCCCGACTTGTTGACCGCATAGTAATCC TTGCTTGGCCAACTCATCTAGACCTTTTTCACTGACATGACCAATTCTAAGATGCCATAGTTTTGTGACATCAGAATCAGGTGTTGAGGATACAACAACA TCACATGTGATTGTGCTTCCTTGTAACATGTAGAGACTATTCTCTTTCTTTCCTTTCATTACAACCATGGTGCCTTTAGATACTCTTATAGCTCCACCTT CACCTTTGTAGCTATAACCTTTTGAATATAGTGTTCCTAAGGATATCATATTTTTCTTCAGCTCTGGAACATGCCTTACATTTGTCAATATTCTTACGAT TCTGTCGTACATCATGATTTCTAATTGTTCCAATGTCAATGACATTGCAGAGAACATTATTTTCGAGAAGGACCTTGCCCTCATTTAAGGGTTGGTAAGT GAAAAACCAATCCTTATTGGGACACATGTGATATGAGCATCCAGAATCAAGTATTCATTCATCTTTTGAGTCATGTTCAGAGACTGTCAGTACATCTGCA CTATCATAGTCATTTGCAACAACTGTATTTCGATGTTCATAAATCTTTTCCTTGCCTTTGCGCTCTGGGCAATTCTTTCTTATATATCATTTCTTGTGAC AGTGAAAACATTTATACTTTATAGACTTTGCTTTAGACTTGGACCTAGATATCCCTTTTTCAGCGTATTGATTTCGCCTCTGTGTTCTTCCTCTAGCAAA GAGACTTTCACCTGAGCCTTCAGATCTTGAATCTGATACTCTTTTCTTCAGTTCTTTCGAGTGCAATGCAGTTTTTACTTCATCCAATGCTAGTTTTTGT CGACCATGCATCATGGTGTAGATGAAGCGTTCCTAAGAATTTGGAAGGGAACATAGTAGAAGAATTGCTTGGTCTCCATCTTCAATTTTAACATCAATAT TCTTTAGATCAATAATAATTTTGTAAAATTTATCCAGTTGATCTTTTATGGGCCTTCCTTCCTGCATTTGAATAGTATATATTCTTTTCTTCAAATACAG TCTATTGGTGAGTGACTTCATCATGTACAGGCTTTCCAGCTTCAACATAATGAAGCAGTTGTAGCTTCATCTGACACTTCTTGTATAAATTCATCTCCCA AGCACAACAAGATTGTACATGTGCTTTTTGTAGTGTTTCATCCTTCTCATCATCGATCAGACTTTTTGGTAGCTTGATCCTACCTTCTAAGGCTTTTCCC AAGTCTTGATAAACTAGTAGAGCTTTCATCTTCAGTCGTCATAGGTTAAAATCATTTTCTCCATTAAATTTCTCCAAATCAAATTTAGCACTCGCCATGA TAACCAGGTACTGGAACAATATCGTAGTTTGTGATTGTACACCAGGAAAGTTCCCAAGAAAGAGAGGTGAGTCTTATCAGACATGCTTAAATACCAGGTC TTTCCTAAGACAGAACTTTCCTAGACGTTCACTTCCACACTATTATAATTTTCACTTTCCAGTAATAAGAACAATTATTTTCTGGTGTGTAAGATTAGAT AATGCTGCGAACATAGAGGATACTAAGAATTTTCTTTTAAATCGTACGACCTAGCATGTGAGAGCTCTATGAGCTCTGACACCAATTTGTTGGTGCGGAA AAACCATGGAGAGAATATAATAGAGAAAATGACACCGAGAACTTAATGTGGTTCGGCAATTTGCCTACGTCCACGGAGAAGAGCAACAAAGATTATTTCA CTATGACAAAAAGAGAACTACAAGTATTTCAGTCACTTCCCAAACTCCAAGTACACCCAATTTCACTCTCACTCAAGCACTCAAATATTTCTCACAATAT TAGAACAAGAGAACAAGAAGAGAGAATAGGCACTAAGCTATGTATTTGGTGTGTCTTACAATGGCTTGGAGCACTCCTATTTATAGCCAAAGCTCTTGAA GATTATGTAGGTAAGGGAAAAAAATATTAATGTTGGTTTAACCAAAATACACTCCTTTTTGTATGGCCACAAACTCTTCCTTTCTCCAAGATGGTCTATA TATAGCCACTTCCTTTCTTTCCTTGGTTACAAGAAAACATTTTCATGATAGTCAATTCACTTCTTTGCTTAGTTACAAGAAAGTCTTTTTAATATCATTT TCTTTTAGCCAATATTCAATAGAGTGGAACTTGACTTATATGTAAAATGATATGGTGCATATAAAAAGCCAATTGTATAGACTATCTTGGGGCTGGAAGA TGCTCAGGTTTATTTAGTTATTCTGTGCTGAAAAGAGAGGGGTTTTGTTTTCTTCTAGGCACACATTAGATTTTACAATATGTTAAATTTGCATCCAATT GTGAGTTATCAGATTTAAGGAAAAATGCAATATATGGTGAATCACCTATTTTGTAATTTTGTAAAGAGTGTGAATGCTTCAATAGTCAAGACAAAATATA TTAGAATAGTTTTTTAATAATAAAATTGCATTAAAATTAGTAT
• Tissue: pods
• Gene name: LI_gene_176355;
• Additional information: -

Expression of Ll_transcript_490820

FPKM

• PAB: 0
• PNAB: 0.5
• PS1: 0.2
• PS2: 0.2
• PS3: 0.3
• PW1: 0.3
• PW2: 0.5
• PW3: 0.1

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_490820

• Blastp: Retrovirus-related Pol polyprotein from transposon TNT 1-94 from Nicotiana with 30.65% of identity
• Blastx: Retrovirus-related Pol polyprotein from transposon TNT 1-94 from Nicotiana with 37.21% of identity
• Eggnog: -
• Kegg: -
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_020963654.1)
• Pfam: -
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;