Ll_transcript_490120

• Id Trinity: TRINITY_DN50326_c3_g2_i3
• Name Transcript: Ll_transcript_490120
• Sequence: CGACTCCAAATCAAAAGGGAGAGATAGAAATCGAGTTCGTCTATCCCTAAGTTGCAGAGCCGGTCTTCCAACCGAAAATCGAGTCGCGACAAATATTATA AAGTAAATAAATATATAAACAACATAAAAAACCCGTTGGGTACCATAAAATACCTACTCACACGGTTAATCATAAATATTACGAGTTTGGTAACAGGAAA GCACTACCTGCGCCCACCTACACCCGTTACCATCCCTAATAATATCTACACTCTAGTAACTAAATCATTCATTTGAATTACTTTTTTTAAAGAGTTAATT ATAACTAAGTATTACGGATAATGTAATGATAACATATACAAATTATAAGGTGTTGTTTAATTTAACTACATTATTAAGGATCTAATGAAAGTAGTCATCA TAAGTGTAACAATGAAGTATGGAAGACGAAATTTAGGCGCCAAAGAGCGGGATTTTCAAAAATTCAAAATAGAAATATAAATCTAGCTTCTGAGTCACGA CTCATAACTCATTCTTCATCTTCTCTGAATCGCACCGCGGCGCGTGTTTATTACGAAGATGGGCGATGGCGATTGCACTTTCCATCTCGAGAGAATGGGC AGAGAACTCAAGTGTCCCATTTGTTGGAGTTTGCTTAATTCTTCAGTTTCACTTACCTGTAACCATGTATTCTGCAATTCATGCATTATCAAATCGATGA AGATAGCTTCCGATTGTCCTGTTTGTAAAGTACCTTACACTCGTAGAGAGGTTCGCCCTGCTCCTCACATGGACAACATGGTCAGCATTTACAAGAGCAT GGAAAATGCTTCTGGAATTAGTATGTTTGTCACTCAGAATGTACCTGTTACTAAATTATCAGATGAAGAAACGCAACATGAAGGTGATGATGATTGTGAA ATGAATGATGTTCGTGAAACTCATAAGAATCATGCACAGAAGATAAATTCCTCCAGAAAAAAGGAGTCAAAGAAGAAGATTACGACAAGCACAAAAGGTG TTGACATTGCAAAACCGTCTTTTCCAGCAAAGAAAAGGATCCAGGTGTCTCAGGATCCTCTTTCAGAAACTCCATTAAAGAATTATAAATTTGGAGACTC TCTAAGTGAAATTGATAAACTGGGAACAGAAGAGGGTTTGATCTTGGCAAATGAAAACGACAATCATGCTATTTCACCTTTCTTTTGGTTAAGAGACGAG GAAGATGGTGAAAAGATAAGTCAGCACTCTAATGGGGATCAATTTATTGATTGTGCAACACCAACTCCTCCTTCATTCAGTGACATGAAGGACTCTGATG ATGAAAGCCCTTCTAAAAAAGCTCCATCAAATGAGGTGCAAAAAAAAGCCTCTGTTAATTTACCTGATAGTGAGATTTTTGAATGGACACAAAGGCCTTT GTCTCCTGAATTATTTTCAAGTCCTGTCAAAATGCAGGTTCAGGATACTGGCGAGATTGATAAAAATCAAGAGGATGGTCAAAATGGGATAAAAAAGTCT ACAAAGAGAGGTAGGAAAGCTAGGGAAAAAGCAAGGCAAAGCAATACTGGGGAACAAAGGGATCCTATTTATGGAATGAATGTTGATACATATATATCAT TAGAAGACAATCAGGAGAAAACATTGGACCATAAGCACAATTCTTCCAATTTGGGGAAGACTAATAGAAGAGCCAAGGAGGTTTCATTCAGAACTAGTAG AAATCAAATACCTCAAACGGCTTGCACAGCCTCCAATATGTTAGTTCTGAGTAATGGTGAAGTGGATATGACAAATAATTCATCACATAAAGAATTTGAG AAGCCTACTCCTCAGGAGGTTGCTGGGAGAAGCAATAGGGAAAGATCTGAAAGACAAAAGCTGCATTATGTGCAGGACCTAGCTGAAGAATTACCTCCAG TGGAGAACAAAACCAATGATTTTGCTGTTTCTCTATCATCAGTTTTGACTCCTGCGGTGGAAGATATTGGAAAGGCCTCTAGCCAAAGCATAAGAAAATA TTCTAGAAAATCCATGTCTTGCAATAGAGAACTGGGGAGTACTAAAAAGTTGAAACTTTCCTCTGATGGTATCATTAAGACTAAAAATGGTGGAGAAATC CAACCTAATGCAAGTCTTCAACAAATTCCTGTTGTTAAAACTTTGAATGATACATCAAAAGAGACACAATGTCCTTTGATGAATCAACCAGTTTTACAGA AATGTGAGAGCCATTTGAAAAAGTATCAGTGTGTTTTCTGTCTCTCATCAGAAGAATCAGAGGTTTCTGGACCGATGGTACATTATTATGACGGGAAGCC TGTAACCACAGATTATGAAGGAGGATACAAAGTCGCACATTCTCACAAGAATTGCACAGAATGGGCCCCAAATGTATATTTTGTAGATGATAATGCAATA AATCTTGAAGCTGAAATAAGCAGAAGTAAGAGAATTAAATGTTGTTTGTGTGGACTTAAGGGTGCCGCACTCGGTTGTTACGAGAAGAGTTGTCGCAAGA GCTTTCATGTTCCTTGTGCCAAGTTAACTTCTCAATGTCGATGGGACATGGAAAATTTTGTCATGTTATGCCCTTTGCATGCTTCTTCCAAGTTGCCCTG TGAAAGTTCAGGATCCCAAGAAAGGAGTAACAAAACAACAGTTAGAGAGAGTAAAAGCCCTGCCGGCAAACATTGCAATACAGTCGAAAGTTGGACTGCT CGTGGAACATCCAACAAAATAGTACTCTGTTGTTCAGCCCTGTCCGTGCAGGAGAGGGGTGTTGTTTCTGAATTTGAAAAGGTGTCCAAGGTTACAGTTT CGAAAAAATGGGATTCAAGTGTCACCCATGTTATAGCATCAACTGATGAAAATGGGGCATGCAGAAGGACCCTCAAAGTATTGTTGGGTATCCTGGAGGG AAAGTGGATTCTCAACATTGATTGGATCAGAGCTTGCATGAAGGAGATGGGACCCGTTGATGAGGGGCGTTATGAAATTAATGCTGACATCCATGGAATC AAGGACGGTCCTCGTCTTGGACGACTGAGAGTACTGAATAAGGTTAGATTTTTCATCGTTGTTGTGATACTTCAATCGTTATTTTAATACAAGGGTAGGT TGATGATGAAAAACATGCAATGGAAAATGTACTAATGTATATTTCCAGCTTTATAGCATATCATTTTTGTATAAACTGAAGTAGACAAATCCTACTCTAG ACTGTAGAAGTATAAATCAGATATCATTCCATATTACAAGTAATCACATTTAAGTATCTTTGGTTATTCACATAACCCAATGGAAAAATTGAGGGAGATG TAAATCACACTATTCAAGCTGGGTGGATGAAATCGCGAGAAGTTTCAAATGTCATATGTAATATAACAGTGTTATTAAAGGTAAAGGGATAATTTTATCA CACGATTATAAGACCTGCAATGTTATATTGGACTAAATTTTAGGTTGTAAATTGTCAACAAGAGAATAAACTTAATGTAGCATATATGAGAATGCTCTAT TTGATGATTGAACAAGCTAGGATTATGAATTAATGCATTAGGGAAAATATTAACTCTATCCATCCTATCTTGCAAGTGAAGATTTTGTCTATTTCACTAA AATGTTTGTGTGCAAACAAGTTGCTTATGCTAACCAAATTTCTTATGCAGCAACCAAAACTTTTTAATGGCTACACGTTTTATTTTATGGGACATTTTGA ACTGTCATACAAGGGCTATCTGCAAGACCTTGTGATTTCTGCTGGAGGGACTATTCTGCATAGAAAACCAGTCTCTGCTGACCAAGAAGCAATGTTTCCT GATATGCAACCATACCAGACCCTCATCATTTACAGCCTTGAGCTTCCTGATAAGTGCATTCCTTCGAAAAAGGATAAAATTTTAAGCCAGAGGCTACGCG ATTCAGAGGCTCTAGCAAGTTCTACAGCTTCAAAGGTAGCAAGTAATACATGGATTCTGAATTCTATTGCAGCGTGCAAGCTCCAAAGCCCTGCTCCATA AAATGTACACATTTTGAGGTCATTTTCCTGTACATGATCTGAACTAGTATTTTCCCTTATTATTCATTTTTATCTTTTTTTGGTTAATGTTTATCTTTGT TTATCAGACATGTTAAATTATAACCATGACAATATGTAGAAAATATTCAAGTTGTTTACTGCAATAAATATATTTAAC
• Tissue: pods
• Gene name: LI_gene_176409;
• Additional information: details;

Expression of Ll_transcript_490120

FPKM

• PAB: 0.3
• PNAB: 0.7
• PS1: 0.3
• PS2: 0.2
• PS3: 0.3
• PW1: 0.1
• PW2: 0.1
• PW3: 0

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_490120

• Blastp: Protein BREAST CANCER SUSCEPTIBILITY 1 homolog from Arabidopsis with 41.26% of identity
• Blastx: Protein BREAST CANCER SUSCEPTIBILITY 1 homolog from Arabidopsis with 41.12% of identity
• Eggnog: E3 ubiquitin-protein ligase that specifically mediates the formation of 'Lys-6'-linked polyubiquitin chains and plays a central role in DNA repair by facilitating cellular responses to DNA damage. It is unclear whether it also mediates the formation of other types of polyubiquitin chains. The E3 ubiquitin-protein ligase activity is required for its tumor suppressor function. The BRCA1-BARD1 heterodimer coordinates a diverse range of cellular pathways such as DNA damage repair, ubiquitination and transcriptional regulation to maintain genomic stability. Regulates centrosomal microtubule nucleation. Required for normal cell cycle progression from G2 to mitosis. Required for appropriate cell cycle arrests after ionizing irradiation in both the S-phase and the G2 phase of the cell cycle. Involved in transcriptional regulation of P21 in response to DNA damage. Required for FANCD2 targeting to sites of DNA damage. May function as a transcriptional regulator. Inhibits lipid synthesis by binding to inactive phosphorylated ACACA and preventing its dephosphorylation. Contributes to homologous recombination repair (HRR) via its direct interaction with PALB2, fine-tunes recombinational repair partly through its modulatory role in the PALB2-dependent loading of BRCA2-RAD51 repair machinery at DNA breaks. Component of the BRCA1-RBBP8 complex which regulates CHEK1 activation and controls cell cycle G2 M checkpoints on DNA damage via BRCA1-mediated ubiquitination of RBBP8 (By similarity)(ENOG4111WR7)
• Kegg: Link to kegg annotations (AT4G21070)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019419483.1)
• Pfam: Zinc finger, C3HC4 type (RING finger) (PF13920.5)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;