| Id Trinity | TRINITY_DN50327_c1_g1_i1 |
|---|---|
| Name Transcript | Ll_transcript_490155 |
| Sequence | CGTGGTACCATATTATTTAGTTGTGATGACCGATACATGGACAGGTCATCTCCATTACCTAGTATGACATATTAATTTAGTGTATGAAAGGTTATAATTC AAACCCTGTTTTCCACCACATTAAACAACGTAGAAAGACAGAGAAACAACAAAGAAAAGAACCTTTTCTTCTTTCTCACAAAGGAGTTTGGTTTGTAAGA ATCTACCTATTAATTGTCATCGTCGATGTCCATCATCTTCAATTTCCTTCTCACATTCTCTTCCCTTTCCTTCTAGAATTCTCCCAAAAACGAGGGGAAA GGAATTAAGAGAAACGAGGGGAGAGAAAATTTTGAAAAAGGGGTGGAATGTTTAGGTAATTAATTCGTTGAAAAAATCGATTTTGATAATTGGGTATTTC TCAAAATTTGTTTTTTCCTTCATTGGTGGAAGGGTTTGGTGATTTCATGGATTTGGATAGCATTGAGTGTGTGTCATTTTCTGATGGCATGGATGAAGAT GAGATCCACCTTCTCCATCATAACTCTGAGTTTTCTTCCACAAAACCTCGCAATGGAAGCACCAATCACAATAATTCTTTGGTTCCTACGGTTATTGCTC CTGCAACCAGCGTCCATGAATTGCTGGAGTGCCCTGTTTGTACCAATTCAATGTACCCTCCAATTCACCAGTGCCACAACGGCCACACCCTGTGTTCCAC ATGTAAAACACGGGTGCATAACCGATGTCCCACTTGTAGGCAAGAGCTTGGAGATATTAGGTGTCTTGCATTAGAGAAGGTGGCTGAATCACTTGAGTTA CCTTGCAAGTACTACTCCCTTGGATGTCCAGAAATCTCTCCATACTACAGCAAGCTTAAGCATGAGACAGTATGCAATTTCAGGCCGTACAGTTGTCCTT ATGCTGGATCAGAGTGTTCTGTTGTTGGGGATATTCCCTTCCTCGTTGCACATTTGAGGGACGATCATAAGGTGGATATGCACACGGGATGCACATTCAA CCATCGTTATGTGAAGTCAAATCCTCGTGAAGTAGAGAATGCAACCTGGATGCTCACAGTATTTCATTGTTTTGGCCAATACTTCTGCCTTCATTTTGAA GCCTTCCAACTTGGCATGGCTCCTGTTTATATGGCATTCCTTCGTTTCATGGGTGACGAGAATGAAGCTCGGAAGTATAGCTATAGCCTAGAGGTTGGGG GCAATGGTAGGAAACTCATGTGGGAGGGTATGCCACGGAGTGTTCGAGATAGCCACCGTAATGTCAGGGACAGCCATGATGGCCTCATTATTCAACGAAG CATGGCCCTATTTATCTCTGGTGGGGATAAGAAGGAGCTGAAACTACGAGTTACTGGAAGAATATGGAAGGAGCAACAGAATCCAGAAGCTAGGGTGTGC ATACCAAATCTTTGTAGCTGAGATATTCTTTGAAAGCTATTTTTATCGTTTGTGTTTGTGACACTCTTTTGACCTTTATTTAAGCCAACTTTCTGTATGT TGTAATAGATTAAGGTACTAAGTTGGCTTTGAAAATTTCAGCTTTCTTAAGCTGTGACAAGCAAGATTGCTTGATCAGAATTTGACACTGGAAACTGGAA TTCGTGTTTCTTGGTCTTAACTGGGTTAAGTTTGGTGCCACAACTTGCCATCAATTCAATTGCATTACTTCAAAATTCACATTGTAGGGCCAAGAATGTC AATTTCATTCTTATTTGTGTTCCACATATTATTTTATAATTTATTACACATCCC BLAST |
| Tissue | pods |
| Gene name | LI_gene_176416; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_490155
| Blastp | E3 ubiquitin-protein ligase SINAT5 from Arabidopsis with 84.11% of identity |
|---|---|
| Blastx | E3 ubiquitin-protein ligase SINAT5 from Arabidopsis with 84.11% of identity |
| Eggnog | - |
| Kegg | Link to kegg annotations (AT5G53360) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_020234445.1) |
| Pfam | Seven in absentia protein family (PF03145.15) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |