Ll_transcript_488572

• Id Trinity: TRINITY_DN50335_c1_g1_i8
• Name Transcript: Ll_transcript_488572
• Sequence: CTCATACTCAGATCCCATTCCCTCATACTCAGATCCCATTTTCTCATATTGCTACTTTAAAAGGCATAATCTTGCTACTTCTATCATCTAAATTTTCACG GTTTTTGTTTCTCCCTTGTCTCTTCTTCAATTTCAAAACAATGTTCTGATTCTTCTTCTACTTCCGACGTTGATTTAGGTTTCCTTTCAACTAATGTATG ATAAGGTATTGAAACTTGACTTTATTCCAATGGTTGCGCCGCCATCGTCGTTAGGATAACCACCATAAGTGGATGCTATCAAGAAGGATAACGATATATC TCTCTCATTGTTGATTATCTCACCAAAGTGAACCTAATATACAACTTCAGTATCATAAATTATTCAACCACTTTATTTCTTTATCTCCTTCTAATAATGT TTAGGAGACACACATAATTTCTTCAATTTTTGCAATAAATTCTTCAATTTTTTACATTGACATACACATGGAACATCATATAATAAGTTGATTTATATCA TAAATTGTATATGTTGTCATCTCAGAAGTAATATTATTGTTCATTGATTCTCTCACATATTCTCCTTGTGTTGGAACAACGACTATGTCGTCTACATAGG TATACGCATAGTTGTTCTTTCTACTTTCTGTTTTATAATGATCTAGAATATTATATTACTTTTATTTTAATTAGCGTTTGTGAGTTCTGGAATAATATTG ATTAGATTAGGTTCTAGTCGGTGTTTAATTTAGTGGAAATTGAGAGAACTCTGTTAATGCATATTGTTAAAGGAGCAAACATTTATATTCTTTCTACTTT TTGTTTTAGTTGTTGTTTGTGCACTTGCTGTTTGTGCTTTAAGAAATGTATAATCTTATTCATTTATATCAACAATGTATATTAACACATAATTTTTTAT TCTTGAGTTGGAAGAGTAATTTATCTTGAGAAGATGATGAACTTTGGTGCTATAGACATGTTTTTTGGCCCCCTTTGCAAGGCTTCACATTTATATAGTT GTTAGTTATTTTTTTGTTCCTAATTTTGTTCTCTAGAATATGATCAACTTGGAGAAGATGCTATTTGTTCTTATACTGCATAAATTTTGTCAGGTCTTTC TTACATGGAAGAGGCATAGTCCAGAGGTGACTTTACATGTTTTATTTAATTTCTATGGTAGTCTTTTAATTTTGTTGGTAAAGTAATTTTTGATGTTTTA ATTACGAGATTTTGTTCAAGGACATCAAAGGAGCAAACATATTGATGGATCCTAATGGGATTGTGAAACTAGCATATTTTGGAATGGCAAAGCATGTTAT AGATATTGGTGAAACATTGTCGTTGTTCATGGAGCTTCAAGCACTAGGTGCTGGATGACTACAGCTCCTCTTAAGCATTTCAGAGGACTAAAATTTTCAG GGATGTCCAATGAATATTGAAGGGACTACTAAGGTGAATATTGAAGGGACTACTAAGGAACCCCTGCTCTCACATCTAGAGGCTTTGCCGAGGAAGATTT TAAAAAAGTAGCCGAGTTCTTTATGAGGCAGTCAAGTTAGCCTTACAGATTAAGGCAAATTCCCAAGGTGCAAACTTCAAAGATTTGGTAGCAGCTATGC ATTCTGATGCACACATTCAACCCAAAATTGCTAAAGTATGCCATGAAGTAGACATATTCTTGCGGTGTTCTTAGTGAATAAGAATATTTGTTATGTATTT TGTTTTTAAAGTGTCATATGAGACTATTTTTAGTTTTTTGAGATTTCATGGTGTGGTTGGATTTATAATGAAGGATGTAGTATAACTCTTTCAATTTTGT TACACTACCTTGGTTATTTGCAATAAAATTTTATTATTGTAAGAACATTGTATTTAAT
• Tissue: pods
• Gene name: LI_gene_176470;
• Additional information: -

Expression of Ll_transcript_488572

FPKM

• PAB: 0.9
• PNAB: 1.2
• PS1: 0.7
• PS2: 1
• PS3: 1.6
• PW1: 0.7
• PW2: 0.5
• PW3: 0.8

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_488572

• Blastp: -
• Blastx: Serine hydroxymethyltransferase 1, mitochondrial from Arabidopsis with 42.86% of identity
• Eggnog: Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism (By similarity)(COG0112)
• Kegg: Link to kegg annotations (AT4G37930)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019461799.1)
• Pfam: -
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;