Ll_transcript_489001

• Id Trinity: TRINITY_DN50337_c3_g2_i4
• Name Transcript: Ll_transcript_489001
• Sequence: ATCTGTTGACCTCGGACATGTGGTCCGTCTTAATTCGCATTTTCGCTTACCATGAGAAGGTGGCTGAGAATATTCAACAACTCATCTAAGGATCAAGAAG AAGCACAGTGGCACGAGTGGTGTGATGTAGCTGATTGAAGAACAGATTGCAAGCCTTCAAGATGGTTGGAAATGGTGGAAGCCTCTCAGCAATGAGTCTT CCCATGCTGACAGAGAAAAACTGGGATAGATGGTGCACACAGATGAGGGTGCTATTCAACTATCAAGAAGTGTGTGAGGTTGTGGAGAATGGATTTGTAA TCCCTGACCCTGGAGCTACAGATGTTCAGAGAGCAATGTACAAAGAAACACAAAAGAAGGACAACAAGGCTTTGTTCCTTCTTCATCAATGTGTTGATGA CATCCACTTTGAGAAGATTCAACAAGCAACCAATGCAAAAGATGCATGGGATGTCTTGATTAGAAGTCATTCTGGAGGAGACAAAATTAAGAAAGTGAAG TTACAAGCATTGAGGAGACAATATGAAAATCTTCACATGGAAGAGAATGATAGAGTAGGTGCATACTTCACAAAGGTACTTACTCTATCTAATCAAATGA AGGGATGTGGTGAATCAGTCTCTGATCTCATGATAATTGAAAAAATCATGAGATCACTGCCACCAAAATTCGATTTCATTGTTGTTGCCATAGAGGAATC GAAGGATGTGAATAGCATGAGGATAGAAGAGCTCCAAAGTTCCTTAGAGGCTCATGAGCTAAGGCTTCTTGAAAGAAATCCTATTAGAAACAATGAGCAG GCCCTAAAAACCACTCATAGCAGAGATGAAGAGAGTAGAAGAAGCAACAAATGGAAAGGAAAGTATGACAGAAGTGACTCAGAAGTGGCACAATCCTCAG ACAAAAGGGGATGGATGAAGAAAAATCCAAAGCAAAAGAAACCTGATAGAAAGAAAGTGGAGTGTTACAACTGTCACAAATTTGGTCACTATTCCTATGA GTGCCTTGCTGAGAAAGCAAAGAAACACAATGACAAAGAAGCATACATAGCTCAAGATGGAGGAGAAGAGGAATCCTTGACACTCATGGTCACAAGTTCT GCAGAACACAACCATGGATCTTGGTATCTTGATTCAGGCTGTTCAAATCATATGACAAGCCACAAAGAGTGGCTCACTGATCTTGACTCAAGCAAGAAAA GCAAAGTCAAGTTTTCAGATGATAGCACACTAAAGGTGGAAGGCAGTGGTGATGTTGTGATTCTGAGGAAGAATGGCTCAAAAGCAGTGATCTCTGATGT ATTGTTCATTCCAGGGTTGAAATGTAATCTTCTGAGCATTGGGCAGCTTGTACAGAAAGGATTCACAGTGGTGATGAAGGATGATCAGTGTGAACTTTTT GATGCACAAAACAAGCTCATATTGAGGAGTGGCTTGACCAAGAATAGAAAATTTCAGGTGAACTTTGATGCAGCTCAGATTCAATGCAATGCAACATTTC AGTCAATGGAAGAGAGTTGGTTGTGGCATTATAGGTATGGACACCTGAATTTCAAGAGCCTGCAACAACTTGGATCAGAAAGCATGGTGCAAGGAATACC AAGAACTACAATGCCTAAGCAGATGTGTGAAGTATGCCTAGCTAGTAAACAAGCCAGAAGGCCTTTTAAGAATCATCTGCATATGAGGGCTAAAGGAATC CTAGATGTTGTGCACTCAGACATTTGTGGTCCATTTGAGGAACCTTCATTAGCAGGTAATAGATACTTCATTACCTTTGTTGATGAGTTTAGTAGAATGC TTTGGCTCTATGTGTTGAAACAGAAAAGTCAGGCTTTTGAAACCTTCCTGAAGTTCAAGGCTTCTATTGAAAAGGAAAGTGGCAGAGAGCTAAAAGTGCT AAGGACTGATGGTGGAGGTGAA
• Tissue: pods
• Gene name: LI_gene_176492;
• Additional information: details;

Expression of Ll_transcript_489001

FPKM

• PAB: 0
• PNAB: 0.5
• PS1: 0.1
• PS2: 0
• PS3: 0.1
• PW1: 0.4
• PW2: 0.1
• PW3: 0.1

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_489001

• Blastp: Retrovirus-related Pol polyprotein from transposon TNT 1-94 from Nicotiana with 30.02% of identity
• Blastx: Retrovirus-related Pol polyprotein from transposon TNT 1-94 from Nicotiana with 29.4% of identity
• Eggnog: -
• Kegg: -
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019433850.1)
• Pfam: gag-polypeptide of LTR copia-type (PF14223.5)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;