| Id Trinity | TRINITY_DN50337_c3_g2_i5 |
|---|---|
| Name Transcript | Ll_transcript_489002 |
| Sequence | ATCTGTTGACCTCGGACATGTGGTCCGTCTTAATTCGCATTTTCGCTTACCATGAGAAGGTGGCTGAGAATATTCAACAACTCATCTAAGGATCAAGAAG AAGCACAGTGGCACGAGTGGTGTGATGTAGCTGATTGAAGAACAGATTGCAAGCCTTCAAGATGGTTGGAAATGGTGGAAGCCTCTCAGCAATGAGTCTT CCCATGCTGACAGAGAAAAACTGGGATAGATGGTGCACACAGATGAGGGTGCTATTCAACTATCAAGAAGTGTGTGAGGTTGTGGAGAATGGATTTGTAA TCCCTGACCCTGGAGCTACAGATGTTCAGAGAGCAATGTACAAAGAAACACAAAAGAAGGACAACAAGGCTTTGTTCCTTCTTCATCAATGTGTTGATGA CATCCACTTTGAGAAGATTCAACAAGCAACCACTGCCAAAGATGCTTGGGAAATCTTGATTCGAAGCCATTCTGGTGGAGACAAGATTAGGAAAGTGAAA TTGCAAGCATTGAGGAGACAATATGAAATGCTTCACATGGAGGAGAATGATAGAGTAGGAGAATACTTCACAAAGGTACTCACTCTATCTAACCAAATGA AGGGGTGTGGTGAATCTGTGTCTGATCTCATGGTAGTTGAAAAAATCATGAGATCTTTGCCACAAAAATTTGATTTCATAGTTGTTGCAATAGAGGAATC AAAGGATGTGAATAGCATGAAAATAGAGGAGCTACAAAGCTCATTGGAGGCTCATGAACTAAGACTTCTTGAAAGAAATCCAATAAGAAGCAGTGAGCAA GCTCTGAAATTCACACACCACAGAGATAATGAGATAAGGAGAAATAGAAGATGGAAGGGAAAGAAGAGTGGAGGTGATCATGATCCTGCAGAATCCTCAG ATAGAAGAGGATGGACAACAAGAAAGAATCAAAAGCAGAAGAAGTTTGACAAAAATAATGTGGAATGCTACAACTATCACAAAGCTGGGCATTATGCATA TGAATGCTCAGCTGAGAAAAGAAAGAAGAATCATCAGCATGACAAAGAGGCTTACAAAGTGCAGGAAGAAAGTGAAGAAGAACCATTGACTCTTATGGTT ACAAACTCTGCAGAACATAACCATGAGTCTTGGTATCTTGACTCAGGATGTTCAAATCACATGACTAGCCACAAAGAATGGCTCATTGACTTTGATTCCA GCAGGAAAAGCAAGGTCAAATTTGCATATGATAGCACTTTGTAGGTGGAAGGGGCTGGAGACATTGTAATTCTCAGAAAGAATGGCTCAAGTGCATTGAT TTCAGATGTTCTATTCATTCCTGGGCTAAAGTGCAACTTGTTGAGCATTGGACAGTTGGTGTAGAAAGGTTTCTCAGTGACAATGAAGCATGATGATTGT GAATTGTTTGATGCTGAGGAGAATCTCATATTGAGGAGCAAATTGACAAATAACAGAACATTTCAAGCACACTTCACAATTGCAGAGAAACAATGCAATG CTGCAATTCACTCTATTGAGGAAAGTTGGCTATGACACTATAGATATGGACACTTAAACTTTAAGAGTCTATGTCAACTTGGTTCAGATGGTCTAGTGCT GGGAATTCCTAAGACAAGTCTACCTAAGAAGATCTGTGAAGTTTGTTTGGCTGGGAAGCAAACCAGAAAACCTTTCAAAGTTGACTTGAGTATGAAGGCT AAGGGAGTTCTAGATGTGGTGCACTCTGATATATGTGGACCATTTGAAGAACCTACACTAGCTGGAAACAGGCTCTTCATTACTTTTGTTGATGAATTCA GTAGAATGCTT BLAST |
| Tissue | pods |
| Gene name | LI_gene_176492; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_489002
| Blastp | - |
|---|---|
| Blastx | Retrovirus-related Pol polyprotein from transposon TNT 1-94 from Nicotiana with 25.68% of identity |
| Eggnog | - |
| Kegg | - |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019433850.1) |
| Pfam | gag-polypeptide of LTR copia-type (PF14223.5) |
| Rfam | - |
| GO | - |