| Id Trinity | TRINITY_DN50345_c0_g2_i12 |
|---|---|
| Name Transcript | Ll_transcript_490945 |
| Sequence | CGAAGAGATTAGTTACTTGCCTTACGACCATACTTGACTCTTAAAACTCCATTTTTTTTTGAAAATTTCTTTTTCATAATTTTCCAATTACCATTACCAC TCTTTGTTTTTATTAATTTAGGACTTGCTTTGTGATGTTTCAGTTTACATCGTCATTTTGTTCCCCCATAATGAGGAAGAGTGAAACTTTAATTTGTGTT CCTATAATGGGGGATTCAATTGACATTATGAAGATTAATATCAACAAAGCTAAACTTGCTGGTGCTGACCTCGTTGAAATTCGATTAGATTCTTTGAAGA TCTTCCACCCCTCTCAACATCTCAATACTCTTATTAAAGACCGCATTTTGCCCCAGTTGTTTACTTACAGGCCAAAATGGGAAGGTGGTATGTATGATGG TGATGATAACAAACGATTGGATGTGCTAAGATTAGCCATGGAATTGGGAGCTGATTACGTTGACGTTGAACTTCAGGTTGCAGATCAGTTCTATGACTCT ATACGTGGGAAGACACTCAATAAAACCAAGGTCATTGTTTCATCTCACAACTATCAGCACACTCCCTCAGTTGAGGATCTTGGCAAACTTGTAGCAAGAA TACAAGCAACCGGGGCAGACATAGTGAAGATTGCAACAACTGCCGTGGAGATCACTGATGTTGCACGCATGTTTCAAATAATGGTCGATTCCCAAGTAAG ATGCGTATGTAACATTTTTTTATCTGGTATTTTTTTTCTTAGTTGCAAACTTAATTTGCAACAAAATTCATATATTGTTGCTAACATATTTTGTCAGCTG ACAGAAATGGAAGATGAACGATGAACAGATAGTGTACAAAATTTAGGACAATAATTTCCGAGCTTCTCATGAGTCATTCTAACAATGGAAACTTTGATCT CTTATACACATCTTATCTCTTATAAGCTATTGACCTTACACATTAGTGAACTTACACTCTTCTGCTTCTGATTATATTGAGTGGCAACACAAAAATTTAT GATTGCTTTGTTGTGGCCTTTTTATATGATTGTAAATAAGTTTAGCATGACCATTTTTTGGAATTTCCAGGTTCCATTTATTGGGCTTGCTATGGGTGAT AGGGGATTGATTTCACGTATACTTTGTGCAAAATTTGGTGGTTATCTCACTTTTGGTACCCTTGAGTCAGGAGTAGTTTCAGCTCCAGGTCAACCTACAA TTAAGGATCTTTTGGATCTATACAACTTTAGGCAAGTGGGACCTGATACAAAAGTATATGGGATTATTGGAAAGCCTGTCAGTCACAGTAAGTCACCCAT ATTGCACAATGGAGCCTTCAAGTCAGTTGGTTTTGATGGAGTTTATGTATTTCTATTGGTGGATGACCTTGCCAATTTTCTCAGGACTTACTCATCAACA GATTTTGTGGGTTTCAGTGTCACCATTCCTCACAAAGAGGCAGCAGTTAAGTGCTGTGATGAGGTTGACCCAGTGGCTAAGTCAATAGGAGCCGTGAATT GTATTATAAGAAGACCAACTGATGGGAAGTTGATTGGATATAACACAGATTATGTTGGCGCTATTTCTGCTATAGAGGATGGAGTGCTACGAGGTAGACT GAATGGTGGTGGCACAGCTGTTTCACCATTAGCTGGTAAGATATTTGTTGTTATTGGAGCTGGTGGTGCTGGGAAGGCACTTGCTTATGGTGCAAAAGAG AAAGGAGCAAGGGTTGTGATTGCAAACCGCACCTATGATCGTGCTAGAGAACTTGCTGATGTAATTGGAGGAGATGCTTTAGCCCTTGCTGATTTAGATA ATTACCATCCTGAGGATGGTATGATTCTAGCAAACACAACCTCAATTGGAATGCAACCAAATGTTGATGAAACACCTATTTCTAAGCATGCTTTGAAATC TTACTCCCTGGTTTTTGATGCCGTATACACGCCCAAAATGACTAGACTCTTGAAGGAAGCGGAAGAATCTGGAGCCACTGTTGTAACAGGATTGGAGATG TTTCTTGGACAAGCATATGGACAATTTGAGAAGTTTACTGGAATGCCAGCTCCGAAGCAGCTCTTCAAAAAAATTACGGAAAACTTGTGATGAGGTTTGC AAGCCCTGACTTGTATCTCATTGATAATGTTTCCCTATGTGTTGAAAGTTCCATCTTTTCTTTCAATCTATTACTCCATTCATGTTTTCTGTTGTCATTG GTTTAAGTAATATAATTGCATGTCTTTGGCTTTTTTTATGTGAACTGGAAATGCTGACTGTTGACTCGTTGCAATATCATGTAACATTGTAACAATATAT ATGCTATTTCCTACATTTATGCCCTCTTTTTTTTCTTAATACACATTTGTATATTATGCTTGAAGCATCCTTCTCTGAAGCTATGAGTTGTCTTCTCAAA TAGCTTTTGTTTATTTGTTCTTATTTTAATTTTCTTTATGTAATAGGATGAGACCAATGATGCCAAATGTGTAGCTGTGAAAATGTAATGGTTGTTTTTA TTGTTGGGAGAAATTTGTTGGTACATATAGGTATGAGATATATTTAGTGTTTGTTGGCTATTGTAATTTACACTTTTAATTATTGTGACCTTAGGCCCAA TGGGCTTTAACATATCAAAAGAAAGAATAATGTTAATGAAAAGTTTAGACAATTAATTGGGTGAGAGAATTGAAAGAATGAAAGGGAAGATTTTGGTACC G BLAST |
| Tissue | pods |
| Gene name | LI_gene_176563; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_490945
| Blastp | Bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic from Arabidopsis with 76.26% of identity |
|---|---|
| Blastx | Bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic from Arabidopsis with 69.73% of identity |
| Eggnog | shikimate dehydrogenase(COG0169) |
| Kegg | Link to kegg annotations (AT3G06350) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019431914.1) |
| Pfam | Type I 3-dehydroquinase (PF01487.14) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |