Ll_transcript_490939

• Id Trinity: TRINITY_DN50345_c0_g2_i8
• Name Transcript: Ll_transcript_490939
• Sequence: CGAAGAGATTAGTTACTTGCCTTACGACCATACTTGACTCTTAAAACTCCATTTTTTTTTGAAAATTTCTTTTTCATAATTTTCCAATTACCATTACCAC TCTTTGTTTTTATTAATTTAGGACTTGCTTTGTGATGTTTCAGTTTACATCGTCATTTTGTTCCCCCATAATGAGGAAGAGTGAAACTTTAATTTGTGTT CCTATAATGGGGGATTCAATTGACATTATGAAGATTAATATCAACAAAGCTAAACTTGCTGGTGCTGACCTCGTTGAAATTCGATTAGATTCTTTGAAGA TCTTCCACCCCTCTCAACATCTCAATACTCTTATTAAAGACCGCATTTTGCCCCAGTTGTTTACTTACAGGCCAAAATGGGAAGGTGGTATGTATGATGG TGATGATAACAAACGATTGGATGTGCTAAGATTAGCCATGGAATTGGGAGCTGATTACGTTGACGTTGAACTTCAGGTTGCAGATCAGTTCTATGACTCT ATACGTGGGAAGACACTCAATAAAACCAAGGTCATTGTTTCATCTCACAACTATCAGCACACTCCCTCAGTTGAGGATCTTGGCAAACTTGTAGCAAGAA TACAAGCAACCGGGGCAGACATAGTGAAGATTGCAACAACTGCCGTGGAGATCACTGATGTTGCACGCATGTTTCAAATAATGGTCGATTCCCAAGTTCC ATTTATTGGGCTTGCTATGGGTGATAGGGGATTGATTTCACGTATACTTTGTGCAAAATTTGGTGGTTATCTCACTTTTGGTACCCTTGAGTCAGGAGTA GTTTCAGCTCCAGGTCAACCTACAATTAAGGATCTTTTGGATCTATACAACTTTAGGCAAGTGGGACCTGATACAAAAGTATATGGGATTATTGGAAAGC CTGTCAGTCACAGTAAGTCACCCATATTGCACAATGGAGCCTTCAAGTCAGTTGGTTTTGATGGAGTTTATGTATTTCTATTGGTGGATGACCTTGCCAA TTTTCTCAGGACTTACTCATCAACAGATTTTGTGGGTTTCAGTGTCACCATTCCTCACAAAGAGGCAGCAGTTAAGTGCTGTGATGAGGTTGACCCAGTG GCTAAGTCAATAGGAGCCGTGAATTGTATTATAAGAAGACCAACTGATGGGAAGTTGATTGGATATAACACAGATTATGTTGGCGCTATTTCTGCTATAG AGGATGGAGTGCTACGAGGTAGACTGAATGGTGGTGGCACAGCTGTTTCACCATTAGCTGGTAAGATATTTGTTGTTATTGGAGCTGGTGGTGCTGGGAA GGCACTTGCTTATGGTGCAAAAGAGAAAGGAGCAAGGGTTGTGATTGCAAACCGCACCTATGATCGTGCTAGAGAACTTGCTGATGTAATTGGAGGAGAT GCTTTAGCCCTTGCTGATTTAGATAATTACCATCCTGAGGATGGTATGATTCTAGCAAACACAACCTCAATTGGAATGCAACCAAATGTTGATGAAACAC CTATTTCTAAGCATGCTTTGAAATCTTACTCCCTGGTTTTTGATGCCGTATACACGCCCAAAATGACTAGACTCTTGAAGGAAGCGGAAGAATCTGGAGC CACTGTTGTAACAGGATTGGAGATGTTTCTTGGACAAGCATATGGACAATTTGAGAAGTTTACTGGAATGCCAGGTAAGTTGAGTGTAAAGAAAATACTA GACTAATTTAAATATACCTTTTGACCTCTCGTTCTGTGGTTTGTACTTAATTCGATTTGATTCGTTTGGAAGTCTTGTTTTTTCTGTTTGATTCTTTTTT CCCGCATTTGCAGCTCCGAAGCAGCTCTTCAAAAAAATTACGGAAAACTTGTGATGAGGTTTGCAAGCCCTGACTTGTATCTCATTGATAATGTTTCCCT ATGTGTTGAAAGTTCCATCTTTTCTTTCAATCTATTACTCCATTCATGTTTTCTGTTGTCATTGGTTTAAGTAATATAATTGCATGTCTTTGGCTTTTTT TATGTGAACTGGAAATGCTGACTGTTGACTCGTTGCAATATCATGTAACATTGTAACAATATATATGCTATTTCCTACATTTATGCCCTCTTTTTTTTCT TAATACACATTTGTATATTATGCTTGAAGCATCCTTCTCTGAAGCTATGAGTTGTC
• Tissue: pods
• Gene name: LI_gene_176563;
• Additional information: details;

Expression of Ll_transcript_490939

FPKM

• PAB: 0.9
• PNAB: 1.3
• PS1: 1.1
• PS2: 1
• PS3: 1
• PW1: 1.3
• PW2: 0.8
• PW3: 0.4

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_490939

• Blastp: Bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic from Arabidopsis with 74.25% of identity
• Blastx: Bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic from Arabidopsis with 69.86% of identity
• Eggnog: shikimate dehydrogenase(COG0169)
• Kegg: Link to kegg annotations (AT3G06350)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019431914.1)
• Pfam: Type I 3-dehydroquinase (PF01487.14)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;