| Id Trinity | TRINITY_DN50351_c0_g3_i12 |
|---|---|
| Name Transcript | Ll_transcript_488886 |
| Sequence | GATAACTGCCCAATTTGTAGAATCCCAATTCCAAAGACTGGTGCTAGACTGCGTCTCCGACTTTTTTATGAGTGCATAGAAGCTGGTCTTATTTCCAGAA GGTGTGATGAAAGATTTCAAGAAATAGAAGACGGGGAGAAACGACTTACTGCTGATGTTCAATGTCTTTATTCTTTGTTTGATGTTGCACTCGAGAATAA CTTGGTTTCTTTAATTTGCCACTGTATCCTTTTCTGTGTCAGTCGTTTTCAGCATCTTTTATTTTTAATTCCTATTGAAGTATCAAAACTAAAATAACAT AGATGCCTCTTAATATTTAAGAAGAAGCATATTACAAGACTTTTTCTTCTTATTAATCTTATCAATAGTTTTTGGTCTCCCTCTTCCCTCAATTATTCTT ATTTGTTTTGTCATTTCCACCTTTGTCCCCACTTTGAATTTTCTTTAACAGAAATTTTACAGACGTTACAGACGTATGTATGGATGAAACTGCTGTTTCC AGTGATCCGGTCTTAGCATTTTTGTTGGATGAAGTGGTTGTAAAGGATTGGTGCAAGAGGACATTCAAAAATGTCTTAACTGAACTACAGGGAATTTATA ATCTTGACGTTGTAGGAATGAAGGGGAGATTGAGTTTACTTATGAAATTTTCATTATATTTGAAGGGAATAACAAATGTGTTAGACATTTTGGAGTCATC ATTTAAGATTACCCTATCATCGCAACTTCATGATTTGCACCATCTCCATGAGTGCATAATAAAGGCGAAACAGCACCTGGAGATTATTATTTGGTGTACT AGACATCAGTTTTTGGAGGATGTGAAATCTCGTTTTACTGATAGTTCATCATGGGCTTCGGTTGTCCGTAAACGTAAATCAGAAGCAGTTAGACGTGCTT GGCCTGATGCAATAAATCAATCCGTGGAGTCAACAGGACACAATGGATCTCTATTTATTGAAGATGCTTTGAATAATCTTGATTTGGAGGAAAGCTTAGC ACAGGAAGTTGGAGAGGGATTTGAGGTTTCAGCCTTGCAGATGGATGGAGCACCATTTTTGAGGTCCAAAACTGACCAGGTGCTGGGTTTCTATCCCTTC AAAAATCTCCGTACTGCTGCTGACCTACTATTTTTACATGGAAGTTCTGATATGGTGATTGCTAAACAAGCAATTTTTCTGTATTATTTGTATGATCGCC ACTGGACAATTCCTGATGAAGAATGGAGACACATAGTAGATGACTTTTCAGCCACATTTAATATTAGCAGACACTCATTACTTGAGTCTTTAACATTTTA CCTTTTGGATGATCATACAGAAGAGGCTTTACAGGAAGCTTGTCGCCTTCTTCCTGATATTTCTGGACCAGCATCACATCCCAAAATTGCTGAAGTACTG TTAGAAAGGGGTAGCCCTGAT BLAST |
| Tissue | pods |
| Gene name | LI_gene_176601; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_488886
| Blastp | E3 ubiquitin-protein ligase HOS1 from Arabidopsis with 60.83% of identity |
|---|---|
| Blastx | E3 ubiquitin-protein ligase HOS1 from Arabidopsis with 60.82% of identity |
| Eggnog | e3 ubiquitin-protein ligase(ENOG4110YTD) |
| Kegg | Link to kegg annotations (AT2G39810) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019423958.1) |
| Pfam | Nuclear pore complex assembly (PF13934.5) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |