| Id Trinity | TRINITY_DN50351_c0_g3_i2 |
|---|---|
| Name Transcript | Ll_transcript_488864 |
| Sequence | TAGAAATTTCCCTCCGAGCAAGAAGTGATTCTGAACAGAGAACATAAGTGTATTGTAAAACGCACCGTTTAGTTATCTAACTCATCATTTTGCTCTTTGG AGAAAATCTGAATCACTCAGAGAGAGAGAGAGAGAGAGATGGAACGAAATCTCAACGATCCTACCGTTTCGTCGATTTCCTCTAATGCAAGATCTTCTTC TTCAACGCTTCAACCTAACTATAGTAGCCGATTAGTTCAGGAAACGTTGGAACACTTGGCATCCATTGATCTAATTGACTTGTGCAAAGAAGCGAAAGTT GAGCGATGTCGGGCAACTAGAGATTTGAGAAGCTGTGGTCGCTATGTCCACCATTTGTTGAATTCATGTGGTCATGCCTCATTATGTGAAGAATGTAGCC AGCGGTGCGATAACTGCCCAATTTGTAGAATCCCAATTCCAAAGACTGGTGCTAGACTGCGTCTCCGACTTTTTTATGAGTGCATAGAAGCTGGTCTTAT TTCTAGAAGGTGTGATGATGGGTTTGAAGAAATAGAAGACGGGGAGAAACAACTAACTGCGGATGTCCAATGCCTTTATTCTTTGTTTGATGTTGCACTC GAGAATAACATGGTTTCTTTAATTTGCCATTACATTACAGATGTATGTATGGATGAAACTGCTGTTTCCTGTGATCCCGTCGTAGCATTTTTGTTGGATG AAGTGGTAGTCAAGGATTGGTGCAAGAGGACATTCAAAAACATATTAACTGAACTACATGGAATTTATAATCTTGATGTTTTAGGAATGAAAGGGAGATT GAGCTCGCTTATGAAATTTCCATTATATTTTAGGGGAATAACAAATGTACTAGAAATTCTAGAGTCATCTTTTAAGGGCACCCTTTCAGCGCAACTTCAT GATTTGCACCATCTCCATGAGAGCATATTAAAGGCGAAGCAGCATCTGGAGATTATCATTTGGTGTACCAGACATCACTTTTTGGAGGATGTGGAATCTC GTTTTACTGATATTTCATCATGGGCTTCAGTTGTCCATAAACGTAAATCAGAAGCAATTAGACGTGCTTGGCCTGATGCAATAAACCAATCAGTGGAGTC AACAGGACACATTGGATCTCTATTTATTGAAGATGCATTGAATAGTCTTGATTTGGAGGAGAGCTTAGTACAGGAAATTGAAGGAGGATTACAAGTTTCA TCCTTGCAGATGGATGGAACACTATCTTTTAGATCTAAAACTGATCAGGTGCTGAGTTGCTATCCCTTCAAAAATCTCCGTACAGCTGCTGACTTACTCT TTTTACATGGAAGTTCTGATACAGTGATTGCTAAACAAGCAATTTTTCTGTATTATTTGTATGATCGCCACTGGACAATTCCTGATGAACAATGGAGACA TATAGTAGAGGACTTTGCAGCTACCTTTAGCATTAGCAGGCACTCGTTACTTGAGTCTTTAACTTTTTACCTTCTGGATGATCACACAGAAGAAGCTTTA CAGGAAGCTTGTCGCCTTCTTCCTGAGATGTCTGGTCCAGTATCACATCCCAAAATTGCTGAAGTACTGTTAGAAAGGGGTAGCCCTGATACAGCTCTTA TGGTTTTAAGGTGGACTGGGCGTGATAGTGGACCACACATGATTTCACTCAGAGATGCTGTAACTGCAGTGCGGGTGAGGGTTGAGTGTGGGCTTCTGAC TGAAGCATTTATGCATCAGAGAGTTCTCTGGACCAGAGTGAAGGAAAAAAAATTCAATAAAGGCGCACTTGGGGATACTTCTGACAAACTAAAAGGCCAA TGTAGTAATTGGGTGGAGTGGGTGGAGGCCTTGGTAGCTGAGATTTGTTTTCTCTGTATTAGGAGGAACTTGGTTGATCGAATGCTAGAACTGCCATGGA ATTCTGACGAAGAGAAATATATACACAAATGTCTTTTGGATTATGCCATTGAAAACCCCCATGGGACTACAGGAAGTCTTCTTGTTGTGTTTTACATTCA GCGCTACAGATACTCTCAAGCATACCAAGTCCATATTAGACTTGAAAATATAGAGCAAGACTACATTTCAAAAGGTTCTATAAGTGAAGAATTTCTACCA AGATTGGAAACTGCTATTCGGTGGAGGGCCAATTTGGTTAATAGATGCTTGGAGTTGTTGCCAGAAACTGAGCAGCACAAATTGAGGAGCGGAAACTTGA CCGAGGACACTGTTACTTCTCATGAAGAAGTTGAAGTCCCTGCTAAATTTGATGTTCCTCCAATTCAGGATTCCAGATCCACCAGTTTATTGATTCCCTC GTCTGCTAACTCTTCCTCTATGCGGCATAATGATCATACAACTGGTTTGCTGAGTTCGTCGACTTTAGGAACTTCAACCAAATTAGGCATACCTTTCCCT ACTACTGGCCCTGAGCTCGGTAATTTCGGTTCCCCATCTTATCGCCATGAGGGGTTACTTATCAGTAATGAGAGTGTGGCAAATAACAGAGGTAAAACTG GAAACGTTCTTAGATATGATAACACTCCAACTCCAAGGAATCGTAGGATCCGTTTCAGGAATGGTTCACCTTTGAAGGGAGTTAACAGAACATCACCAAG CAGTTCCCAGGAAAATAAGGTGGAGAAAATCCCGCCAGGAGTTGAACATAATTTGCTTTTTGGTAATTATCAAACTACCCCCCATGGGAGGGGGGCTAAA GCTAAGCATGATACTAGATCTGGGCGCAGCTATTCGAAAGAGTTTGCAAATGACCTACCAAATATGTCTAGCTGGAATGTCAAAGCACATAAAGATGATA GAATTTGGAATGTAGAGTCTACTGGTGATCCAATGGAGGTTTCTCAGAGCTATGTGGAAAAGAAATTAGATATGGGAGAAAATATCAATGGTGGACCTAG ATGGAGATCTGATGAAACAAGTGATGAGGATGAGGAGCAGGGCCTGGAAAAAGCCATGGATATAGCTCACTATGCAACTCCAACTAGGACAACTAGAAGA AGCAGATTTGCCATGAGATGAAAACACAAACCTTTTTAATTCACTAAAGCTTTGTTTGTGAGTTGGTTTGTGAAGGAAGGGAAATCCCTGAGAGTCATGA AATATACTTGTGAGATTGTTTTGAAGCTTTCATTTTCTCTTCATTCCTTTATGAAACCCAATCCACAAACAAAACCTAAAGAATTCTGGAAAGTTTCTGG ATGAGTAGAAAGTTAAGCAAATTTGCTATGAGGATAAGAGCTCTGCCGCTTTGGGAATTCTAGTTTTCAAGTTTTTACTTTATGCATATACAGTGGTTTT AGTTGTGCAGCTAATATTCAGTAAGGGAAATGATAATTTTAGAGGTTCATTTCCGAACCCTTTTCCTTCAATCATTGTAAGAGTTATAATTCTAGCCTTG TAGATCAGTTCTTTAAGGGTTAGTTTAGGAGATGGATTTTGGAGGGGAATGGTTAGTTTAGGAGATGGATTTTGGAGGGGAATGGTTAGTTTAGGAGATG GATTTT BLAST |
| Tissue | pods |
| Gene name | LI_gene_176601; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_488864
| Blastp | E3 ubiquitin-protein ligase HOS1 from Arabidopsis with 49.73% of identity |
|---|---|
| Blastx | E3 ubiquitin-protein ligase HOS1 from Arabidopsis with 49.67% of identity |
| Eggnog | e3 ubiquitin-protein ligase(ENOG4110YTD) |
| Kegg | Link to kegg annotations (AT2G39810) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019423958.1) |
| Pfam | Nuclear pore complex assembly (PF13934.5) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |