Ll_transcript_488875

• Id Trinity: TRINITY_DN50351_c0_g3_i5
• Name Transcript: Ll_transcript_488875
• Sequence: AAGAAGTCTTTCAAAAACCCTCAATTTCCAATACGTACTCGTTTCCCTCCGAGCAAGGAGCATATTTGTGCGTTTTCACTGAACTGTAACACGCACCGTT TAGTCCTCTAACACTTCATTTTGACCTTCGGAGAAAATCCAACTCACTCATAGTTCAGCATCGCAGTGTGTCTGAGAAATGGATGCAAAACTCAACGGAC CCACCGTTTCGTTGAGCTCCACCGGCGGCATCGCCGTCACAACATCTTCTTCCTCTACGCTACAACCAAACTACAGTAGCCGATTAGTTCAGGAAACATT GAACCACTTGGCAACAATTGATCTAATTGAGTTGTGCAAGGAAGCGAAAGTTGAGTGCTGCAGGGCAACTAGGGATCTGAGAAGCTGTGGTCGCTATGTC CACCATGTGTTGAATTCATGTGGCCATGCTTCATTATGCGAAGAATGTAGTCAACGGTGTGATAACTGCCCAATTTGTAGAATCCCAATTCCACAAACTG GTGCTAGATTGCGTCTCCGACTTTATTATGAGTGCATAGAAGCTGGTCTTATTTCTAGAAGGTGTGATGATGGGTTTGAAGAAATAGAAGACGGGGAGAA ACAACTAACTGCGGATGTCCAATGCCTTTATTCTTTGTTTGATGTTGCACTCGAGAATAACATGGTTTCTTTAATTTGCCATTACATTACAGATGTATGT ATGGATGAAACTGCTGTTTCCTGTGATCCCGTCGTAGCATTTTTGTTGGATGAAGTGGTAGTCAAGGATTGGTGCAAGAGGACATTCAAAAACATATTAA CTGAACTACATGGAATTTATAATCTTGATGTTTTAGGAATGAAAGGGAGATTGAGCTCGCTTATGAAATTTCCATTATATTTTAGGGGAATAACAAATGT ACTAGAAATTCTAGAGTCATCTTTTAAGGGCACCCTTTCAGCGCAACTTCATGATTTGCACCATCTCCATGAGAGCATATTAAAGGCGAAGCAGCATCTG GAGATTATCATTTGGTGTACCAGACATCACTTTTTGGAGGATGTGGAATCTCGTTTTACTGATATTTCATCATGGGCTTCAGTTGTCCATAAACGTAAAT CAGAAGCAATTAGACGTGCTTGGCCTGATGCAATAAACCAATCAGTGGAGTCAACAGGACACATTGGATCTCTATTTATTGAAGATGCATTGAATAGTCT TGATTTGGAGGAGAGCTTAGTACAGGAAATTGAAGGAGGATTACAAGTTTCATCCTTGCAGATGGATGGAACACTATCTTTTAGATCTAAAACTGATCAG GTGCTGAGTTGCTATCCCTTCAAAAATCTCCGTACAGCTGCTGACTTACTCTTTTTACATGGAAGTTCTGATACAGTGATTGCTAAACAAGCAATTTTTC TGTATTATTTGTATGATCGCCACTGGACAATTCCTGATGAACAATGGAGACATATAGTAGAGGACTTTGCAGCTACCTTTAGCATTAGCAGGCACTCGTT ACTTGAGTCTTTAACTTTTTACCTTCTGGATGATCACACAGAAGAAGCTTTACAGGAAGCTTGTCGCCTTCTTCCTGAGATGTCTGGTCCAGTATCACAT CCCAAAATTGCTGAAGTACTGTTAGAAAGGGGTAGCCCTGATACAGCTCTTATGGTTTTAAGGTGGACTGGGCGTGATAGTGGACCACACATGATTTCAC TCAGAGATGCTGTCACTGCAGTGCGGGTGAGGGTTGAATGTGGGCTTCTGACTGAAGCATTTATGCATCAGAGAGTTCTCTGGACCAGAGTGAAGGAAAA ACATTTGAATAAAGGGGCATTTGGGGGTACTTCCGACAAACTAAAAGACCAATGTAGTAATTGGGTGGAGTGGGTGGAGGCCTTAGTGACTGAGATTTGC TGCCTCTGTATTAGGAGGAACTTGGCTGATCGAATGCTAGAATTGCCATGGAATTCTGACGAAGAGATATATATACACAAGTGTCTTTTGGATTACGCCA TTGAAGACCCCCGGAGGACTACCGGAAGTCTTCTTGTTGTGTTTTACATTCAGCGCTACAGATACTCTGAAGCATACCAAGTTCATGTTAGACTTGAAAA GATAGAACAAGACACCATTTCAAAAGGTTCTATAAGTGAAGAATTTCTACCAAGATTAGAAACGGCTGTTCGGTGGAGAGCGAATTTGGTTAATAGATGC TTGGAGTTGTTGCCAGATATTGAGCAGCAAAAAGTGAGAAGCGGGATCTTGACTGAGGACGCTGGTACATTTCATGAAGAAATTGAAATCCCTGCTAAAT TTGATGTTCCTCCGATTCATGATTCCAGATCCACCAGTTTATTGATTCCCTCTTCTGCAAATTCTTCATCCCTGCTGCAGAATAATCATACAAATGGTTT GTTGAGTTCATCAACTTTAGGAACTTCAACCAAATTAGGCATATCTTTCCCCACTACCGGCCCTGAGCTTGGTAATATTCGTTCGCCATCTTATCACCAT GAGGGCTTAATTACCAGTAACGAGAGGGTTCCAAATAACCGTGGCAAAATTGGAAAAATCCTTAGATATGATAACACTCCAACTCCAAGGAGTCGTAAGA TCCGTCTCATGAATGATTCACCTCTAAAGGGAGTTAACAGAACATCACCTAGCAGTTTCCAGGAAAATAAAGTGGATAAAATTTTGCCAGGAGTTGAACA GAATTTGTTTTCTGGTTTTTATCAAAGTACTCCACATCCTCCTACTTACTCTGGGATGGCTATAGCTAATCCTGATACTCGATCTGGGCGCAGCTCTTCA AAAGAATTTGCAAATGACCTCCCAAATATGTCAAGCTGGAATGTCCAAGCACACACAAATGATAGAAGTTGGAATGTAGAGTCTATTAATGATCCAATGG AGGTTTCTCTGAGCCACATGGAGAAGAAATTAGACATTGGAGAAAACATCAATGGTGGACCTCGTTGGAGATCTGATGAAACTAGTGACGAGGACGAGGA ACAGGGCCTGGAAAAGGCTATGGATAAAGCCCATCATGCAACTCCAACTAGGACAACCAGAAGAAGCAGATTTGCCATGAGATGAAAGCACAACCTTTTT TCACTAAAGAATTCTGGAAAATTTATGAAAAGAATATGATGAGTGTACTAGTTAAACAATGTGTTTTGAGGATGAGAGATGTGCCCTTTTGGAATTTCGA GTTTTTTCTCATGCATGTACTTGATCTTAGTTGTGCAGCTAAATCATTGAGGGAAATGTTAATTTTATACTCATTTTTTATGAATAAAATATAAATAAAA AGCCCACCCTAATACCTGAGTAAAACTCTTCATTTATCTAATTAAGCTGGCTTTAGCATGAGCAGTAATAAAATGCATGTATTAGCA
• Tissue: pods
• Gene name: LI_gene_176601;
• Additional information: details;

Expression of Ll_transcript_488875

FPKM

• PAB: 0.1
• PNAB: 2.8
• PS1: 4.5
• PS2: 2.3
• PS3: 2.7
• PW1: 2.6
• PW2: 1.8
• PW3: 2.7

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_488875

• Blastp: E3 ubiquitin-protein ligase HOS1 from Arabidopsis with 49.84% of identity
• Blastx: E3 ubiquitin-protein ligase HOS1 from Arabidopsis with 49.3% of identity
• Eggnog: e3 ubiquitin-protein ligase(ENOG4110YTD)
• Kegg: Link to kegg annotations (AT2G39810)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019421505.1)
• Pfam: Nuclear pore complex assembly (PF13934.5)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;