Ll_transcript_488877

• Id Trinity: TRINITY_DN50351_c0_g3_i6
• Name Transcript: Ll_transcript_488877
• Sequence: TAGAAATTTCCCTCCGAGCAAGAAGTGATTCTGAACAGAGAACATAAGTGTATTGTAAAACGCACCGTTTAGTTATCTAACTCATCATTTTGCTCTTTGG AGAAAATCTGAATCACTCAGAGAGAGAGAGAGAGAGAGATGGAACGAAATCTCAACGATCCTACCGTTTCGTCGATTTCCTCTAATGCAAGATCTTCTTC TTCAACGCTTCAACCTAACTATAGTAGCCGATTAGTTCAGGAAACGTTGGAACACTTGGCATCCATTGATCTAATTGACTTGTGCAAAGAAGCGAAAGTT GAGCGATGTCGGGCAACTAGAGATTTGAGAAGCTGTGGTCGCTATGTCCACCATTTGTTGAATTCATGTGGTCATGCCTCATTATGTGAAGAATGTAGCC AGCGGTGCGATAACTGCCCAATTTGTAGAATCCCAATTCCAAAGACTGGTGCTAGACTGCGTCTCCGACTTTTTTATGAGTGCATAGAAGCTGGTCTTAT TTCTAGAAGGTGTGATGATGGGTTTGAAGAAATAGAAGACGGGGAGAAACAACTAACTGCGGATGTCCAATGCCTTTATTCTTTGTTTGATGTTGCACTC GAGAATAACATGGTTTCTTTAATTTGCCATTACATTACAGATGTATGTATGGATGAAACTGCTGTTTCCTGTGATCCCGTCGTAGCATTTTTGTTGGATG AAGTGGTAGTCAAGGATTGGTGCAAGAGGACATTCAAAAACATATTAACTGAACTACATGGAATTTGTATCCTCAAAACTTGTTTAATGTTTCTATCTAA AGCTTGTTACAACTTACAATTGTGTTCTTTATGAGACTCAGTAATGCTTGTTATCTCTAACAATCTTCACCAGATAATCTTGATGTTTTAGGAATGAAAG GGAGATTGAGCTCGCTTATGAAATTTCCATTATATTTTAGGGGAATAACAAATGTACTAGAAATTCTAGAGTCATCTTTTAAGGGCACCCTTTCAGCGCA ACTTCATGATTTGCACCATCTCCATGAGAGCATATTAAAGGCGAAGCAGCATCTGGAGATTATCATTTGGTGTACCAGACATCACTTTTTGGAGGATGTG GAATCTCGTTTTACTGATATTTCATCATGGGCTTCAGTTGTCCATAAACGTAAATCAGAAGCAATTAGACGTGCTTGGCCTGATGCAATAAACCAATCAG TGGAGTCAACAGGACACATTGGATCTCTATTTATTGAAGATGCATTGAATAGTCTTGATTTGGAGGAGAGCTTAGTACAGGAAATTGAAGGAGGATTACA AGTTTCATCCTTGCAGATGGATGGAACACTATCTTTTAGATCTAAAACTGATCAGGTGCTGAGTTGCTATCCCTTCAAAAATCTCCGTACAGCTGCTGAC TTACTCTTTTTACATGGAAGTTCTGATACAGTGATTGCTAAACAAGCAATTTTTCTGTATTATTTGTATGATCGCCACTGGACAATTCCTGATGAACAAT GGAGACATATAGTAGAGGACTTTGCAGCTACCTTTAGCATTAGCAGGCACTCGTTACTTGAGTCTTTAACTTTTTACCTTCTGGATGATCACACAGAAGA AGCTTTACAGGAAGCTTGTCGCCTTCTTCCTGAGATGTCTGGTCCAGTATCACATCCCAAAATTGCTGAAGTACTGTTAGAAAGGGGTAGCCCTGATACA GCTCTTATGGTTTTAAGGTGGACTGGGCGTGATAGTGGACCACACATGATTTCACTCAGAGATGCTGTAACTGCAGTGCGGGTGAGGGTTGAGTGTGGGC TTCTGACTGAAGCATTTATGCATCAGAGAGTTCTCTGGACCAGAGTGAAGGAAAAAAAATTCAATAAAGGCGCACTTGGGGATACTTCTGACAAACTAAA AGGCCAATGTAGTAATTGGGTGGAGTGGGTGGAGGCCTTGGTAGCTGAGATTTGTTTTCTCTGTATTAGGAGGAACTTGGTTGATCGAATGCTAGAACTG CCATGGAATTCTGACGAAGAGAAATATATACACAAATGTCTTTTGGATTATGCCATTGAAAACCCCCATGGGACTACAGGAAGTCTTCTTGTTGTGTTTT ACATTCAGCGCTACAGATACTCTCAAGCATACCAAGTCCATATTAGACTTGAAAATATAGAGCAAGACTACATTTCAAAAGGTTCTATAAGTGAAGAATT TCTACCAAGATTGGAAACTGCTATTCGGTGGAGGGCCAATTTGGTTAATAGATGCTTGGAGTTGTTGCCAGAAACTGAGCAGCACAAATTGAGGAGCGGA AACTTGACCGAGGACACTGTTACTTCTCATGAAGAAGTTGAAGTCCCTGCTAAATTTGATGTTCCTCCAATTCAGGATTCCAGATCCACCAGTTTATTGA TTCCCTCGTCTGCTAACTCTTCCTCTATGCGGCATAATGATCATACAACTGGTTTGCTGAGTTCGTCGACTTTAGGAACTTCAACCAAATTAGGCATACC TTTCCCTACTACTGGCCCTGAGCTCGGTAATTTCGGTTCCCCATCTTATCGCCATGAGGGGTTACTTATCAGTAATGAGAGTGTGGCAAATAACAGAGGT AAAACTGGAAACGTTCTTAGATATGATAACACTCCAACTCCAAGGAATCGTAGGATCCGTTTCAGGAATGGTTCACCTTTGAAGGGAGTTAACAGAACAT CACCAAGCAGTTCCCAGGAAAATAAGGTGGAGAAAATCCCGCCAGGAGTTGAACATAATTTGCTTTTTGGTAATTATCAAACTACCCCCCATGGGAGGGG GGCTAAAGCTAAGCATGATACTAGATCTGGGCGCAGCTATTCGAAAGAGTTTGCAAATGACCTACCAAATATGTCTAGCTGGAATGTCAAAGCACATAAA GATGATAGAATTTGGAATGTAGAGTCTACTGGTGATCCAATGGAGGTTTCTCAGAGCTATGTGGAAAAGAAATTAGATATGGGAGAAAATATCAATGGTG GACCTAGATGGAGATCTGATGAAACAAGTGATGAGGATGAGGAGCAGGGCCTGGAAAAAGCCATGGATATAGCTCACTATGCAACTCCAACTAGGACAAC TAGAAGAAGCAGATTTGCCATGAGATGAAAACACAAACCTTTTTAATTCACTAAAGCTTTGTTTGTGAGTTGGTTTGTGAAGGAAGGGAAATCCCTGAGA GTCATGAAATATACTTGTGAGATTGTTTTGAAGCTTTCATTTTCTCTTCATTCCTTTATGAAACCCAATCCACAAACAAAACCTAAAGAATTCTGGAAAG TTTCTGGATGAGTAGAAAGTTAAGCAAATTTGCTATGAGGATAAGAGCTCTGCCGCTTTGGGAATTCTAGTTTTCAAGTTTTTACTTTATGCATATACAG TGGTTTTAGTTGTGCAGCTAATATTCAGTAAGGGAAATGATAATTTTAGAGGTTCATTTCCGAACCCTTTTCCTTCAATCATTGTAAGAGTTATAATTCT AGCCTTGTAGATCAGTTCTTTAAGGGTTAGTTTAGGAGATGGATTTTGGAGGGGAATGGTTAGTTTAGGAGATGGATTTTGGAGGGGAATGGTTAGTTTA GGAGATGGATTTT
• Tissue: pods
• Gene name: LI_gene_176601;
• Additional information: details;

Expression of Ll_transcript_488877

FPKM

• PAB: 0.2
• PNAB: 0
• PS1: 1.2
• PS2: 1
• PS3: 1.3
• PW1: 0.5
• PW2: 0
• PW3: 1.1

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_488877

• Blastp: E3 ubiquitin-protein ligase HOS1 from Arabidopsis with 45.05% of identity
• Blastx: E3 ubiquitin-protein ligase HOS1 from Arabidopsis with 44.69% of identity
• Eggnog: e3 ubiquitin-protein ligase(ENOG4110YTD)
• Kegg: Link to kegg annotations (AT2G39810)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019423958.1)
• Pfam: Nuclear pore complex assembly (PF13934.5)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;