| Id Trinity | TRINITY_DN50356_c0_g2_i4 |
|---|---|
| Name Transcript | Ll_transcript_489501 |
| Sequence | AAGGATGGGGAAGAGGCATGCATTTGAAATGTATTGTTTGTACCTAAAATGAGGAACAATTTGATCAGTCTTGGTCAATTGTTGGAGAAAGGGTACAATA TTTGCATGAGAGATAGAATGCTCAAGGTCTATAGCAATGATCGAAATCTAATCTTGAAGGCTCCATTGTCTCAAAACAGAACCTTCAAGATTGGAATTCA TCTTGCTGACCATAATTGCCTGAAGTCAATTGCAGATGAGACTTGGCTATGGCATCAAAGACTTGGACATCTGAATTGGAGGAGTATGAATCAGATGAGC AAGGACAAGATGGTTCTTGGAATACCAACTTTCAGAACAGAAGTTGAAACCTGTAGGGAGTGTCTCATTGGCAAGCAAACAAGGAAGAATTTCAAGTCAT TCATTCCAACTAGATCTACCAAGCCACTGGAACTAGTTTATACAGATGTATGTGGCCCTATGGAGGTACAATCAATTGGAGGTAACAACTACTTTGTTAC CTTCAAGGATGATTTTACAAGGAAGATGTGGATCTATCTGATTCAAAGAAAGAATGAAGTGCTTGACAGATTCAAGAATTTCAAGTTGGTTGCAGAAAAT CAGTGTGGACTGAGAATGAAATGCTTGAGGAGTGATGGAGGAGGAGAATATGTGTCTCATGAATTCAACCAATTCTGTGAGAAAGAAGGGATGATTCATG AAGTGATTGCTCCATACACACCTCAGCATAATGGAACAACAGAGAGGGTAAACAGGTCAGTGCTCAATATGACAAGAAGTCTGCTGAAAACCAAAGGTCT ACCAAAGTTGTTTTGGGGAGAAGCTGTGTCAACTGCAACCTATTTGATCAATAGAAGTCCAACAAAGAGACTGAAAGGCATGACACCTGAAGAAAAATGG TCAGGGATCAAGCCAAGTGTGGCACATTTCAAGATTTTTGGCTCTATATGCTACAAGCACATACCTGATGCAAGGAGGAAAAAGCTTGATGATAGGAGTG AAAAATTGATCTTCCTTGGCTATCACTCAACTGGATCATACAAGGTATTCAATCCTATTGATAATAATTTTTCATTCAGTAGGGATGTGGTATTTGATGA GACAGATGCATGGGACTGGAACACAAAACCAGTAGTGTCAAGCAAGCCTGGCCTGATGCACATAGAAGGCACAAGTGCAACACCAAATCTAACAAGTCCT GAGACAGAAGGTGCTGAGACAGTGATAGATAATGCAGGCCAAGCAACAAATGACTCAGGTGCAAGACCTCAAAGACAAAGGCAACTACCACCTAGACTGA GGGACTATGAGTTGTTTCCAGATGCTTCAATCACCTCAGAAGGGGATCTGGTTCACATGGCACTAATGGCAGATATGGAACCTATCACTTTTGAAGAAGC AGCACAACAAAAGTATTGGATTGAAGCAATGCAAGAAGAGATAAAGGCAATAGAAAGAAACAACACTTGGGAATTAACAACTCTACCCAAAGGAAAGAAG GCAATATCAGTAAAGTGGGTATATAAGGTCAAATTGCAGCCAGATGGATCAATTGCTAAGCATAAGGCCAGACTGGTTGCAAAGGGCTTTCTGCAAAAAC CAGGCCTAGACTTTGAGGAAGTGTTTGCACCAGTTGCAAGGATTGAAACAGTGAGATTGATCATAGCCATAGCAAGCATTGAAAACTGGAATTTGAGTTA GATGGATGTGAAATCAGCCTTCCTTAATGGACCACTTGACAAGGAGGTGTTTGTGAGTCAACCAGCTGGCTTTGAAGTTTCAGGACAAGAACACGAAGTA TACAAACTGCACAAGGCTTTGTATGGATTGAGACAAGCTCCTAGAGCTTGGAACAAGAGAATTGACACATTTCTTGTTCAGCTAGGACTTGTGAGGTGCA TAAATGAGCATGGTATCTATGTGAAGAGTGCACCAGAAGTAGCCTCAGTGATCATATGCCTATATGTTGATGATCTTCTGATAACAGGCTGCAAAGTGGA TGAGATTGAATGCATCAAGGACAGCCTGAAAGCTGAATTTGAAATGACTGACCTAGGAACACTATCTTACTTCTTGGGCATGGAATTCACCAGAAACAGC AAGGGAATTTTAATGCACCAGAAGAAGTATACCTCTGATGTACTTAAGAGGTTCAACATGATTGACTCCAATGCTTCTTCCACACCAGTAGAGACTGGAA CACACTTGTGTTATGCAAGCAGAGATGGAGAATTCAAAGAGGGTGAAGAGGTGGATCCTAGGCTATACAAACAGATGATTGGTTCTTTGAGATACATCTG CAACTCAAGACCAGACATCACCTATGGAGTTGGCTTGGTTACCAGGTATATGGAGAAACCTAAGACCTCTCACTTGAAAGCAGTAAAGAGGGTGCTTAGA TACCTCAAAGGAACCATGGAATTTGGAGTGTACTTCCCTGCAACAGTTGAGGACAGTGGCAAGACAGTTCATGGCTACACTGATGCAGATTGGTGTGGAG ATAAGGATGATCGAAAAAGCACCTCAGGTTACTTGTTTAAGCTTGGTGGTGCATCCATTAGTTGGAGTTCTCAAAAGCAGAAGGTGGTTGCTTTGTCTTC ATGTGAAGCAGAATACATAGCTGCTTGTTTGGGTGGTTGTCAAGGTTTGTGGCTGAATTCACTAATGAAGGAGTTGGGAGTCTATCCAATTGATTCAATG CTGTTGTTCATTGATAACCAGTCAGCCATAAACTTAGCAAGAAATCCAGTTTCCCATGGTCGTAGCAAGCACATTGAAACCAAATACCATTTCCTAAGAG ATCATGTAGAAAAGGGTAATTTGAAAGTTGAATTCTGTACCTCACAGAACCAACAAGCAGATATCTTAACAAAGGCTCTAAGGAAGGATGTGTTTGAGTT GCAAAGAAGGAAGCTTGGTGTGATAAGCATAACAAGCTTGAATTAGGGAAGAGTGTAGGAATTAGTTGTAATTCATCATGTAACTCAGCTTGTAATCCAT CTAGTTATGCTTAGGATTAATTGGGTTTGATTAGAAACTAATTGGGCTTGTTTTGGTTGAGTTGTTGAGAACTTACTATAAATAGTAAGATTTTAAATTT CTGTTTTATCAGTTAATAACAGCTTTCCTATTTTGGCAAGTTTTACTATTCATCATCTTCTACCTTTCTTCTTCTCTTTTTCTGCGTTTTCTTCCTTTCC TTTCTTCCTTTCCAACAGTGGTATCTAGAGCTATTAAGAACAGGGACGTGTGGGTGAGCACAAGAATTCTGCGATTTCAAGCTGAACCAGAAAACTCGAA AGGTGCAACAATGACAACTTCGAATGGATTTGCAATGAAGCTTCCAGTGTTAGATGGCAAGAACTACGATCACTGGTCTGTCCAGATGAGGGCCATCTTT GGTTTTCAGGAATGCCGTGATGTGGTGTTGAATGGATTTCAGCAGCTGGGTGAAAATCCAACAGAAACACAGAAGATGGAGTTCAGAGAAGCTGAGAAAA GGGATTGCAAGGCAATCTTCTTGATCCACCAATGTGTGGATCATGCAAACTTTGACAAGATTTCATCAGCTCAAACCTCTAAAGAAGCCTGGGAAATCTT GGAAAAGTGTTATGGAGGTAGCTTGAAGGTGAAGAAAATCAAATTGCAAATGCTCAGAAGGCAATTTGAACTTTTGCAAATGGATGAAGAAGAGAAAGTG GCAGATTACTTTGCAAGAATCAGAAGCTTAATCAATCTGATGAGGAGTTATGGTGATCAGATGAGTGAATTGAGCAAGGTGGACAAGATTCTAAGGACCC TTTCAACCAAATTTGACAATATGGTCATTGCCATAGAGGAGTCCAAAGATCTTGAGACCATAAGATTGGATGAATTGCAAGGATCATTGGAGGCTCATGA GCAGAGGTTGAAGGAGAGGCATAATGGCAGACTCACTCAGCAGGCTCTGAGTGCACAATTCAAGAAGAAGTGCATGAGCTTCAATGATGCAAGGAAGAAG GATTCTGAAAAAAATGCCAATAGATAAGAAGGATGGAACTGAATCCTCAACTTCAAGGCAATTTGATGTGAAAGGAAGCAAGAAATGGAATGGTGCCAAG AAGAAAAAGGATAAAAGCAAGATTCAGTGCTATGCCTGCAAGAACTATGGACACTATGCCTCTGAGTGCAAGTCCAAGAAAGTTCTTAAGGATGAGGAAG CAAGGCTTGCCAAGGATGAGAACTCAGAAGAAGAGGTGTTGCTGCTAGCACAAAGTGACAACACTGAATCAAACTTGGTTGCTGTGGCTGAAACTCAGAA GGCTATCACCAAGGATGATGCAGACAGTTGGTATTTGGACACAGGATGTTCAAACCATATGACAGGCCATAGAGAGTGGTTCACTGAGCTTGATGAGTCA GTGAAGCCTAGAGTTAAATTTGCAGATGATAGCTACATTGTAGCAGAAGGAATGGGCAGAATTATGATCAAGAGGAAGGATGGGGAAGAGGCATGCATTT GAAATGTATTGTTTGTACCTAAAATGAGGAACAATTTGATCAGTCTTGGTCAATTGTTGGAGAAAGGGTACAATATTTGCATGAGAGATAGAATGCTCAA GGTCTATAGCAATGATCGAAATCTAATCTTGAAGGCTCCATTGTCTCA BLAST |
| Tissue | pods |
| Gene name | LI_gene_176639; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_489501
| Blastp | Retrovirus-related Pol polyprotein from transposon TNT 1-94 from Nicotiana with 35.94% of identity |
|---|---|
| Blastx | Retrovirus-related Pol polyprotein from transposon TNT 1-94 from Nicotiana with 37.04% of identity |
| Eggnog | - |
| Kegg | - |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019465092.1) |
| Pfam | GAG-pre-integrase domain (PF13976.5) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |