Ll_transcript_489097

• Id Trinity: TRINITY_DN50358_c0_g1_i1
• Name Transcript: Ll_transcript_489097
• Sequence: AATGATTTGAGCGCTGAAATATCATTTCGCGCCAAACTTTTCACTTTCTTAACACACATTTGCGCCTCTTCATCGTTCACACTTCACCAAACCCTTCTAT CTCTCTCTGTTGAAGATGAATCGTCAGAAATCAATACTATCATTCTTCCAGAAAACCGCACCGGGAACCGACACTTCCGGTGGCCCGCGAGGATCCGATT CACCGGTTCAGCAAGCTAACCGTAATAAGGTCACAGCCGCTTCCAGTCATCCACCTTCCGACGATGTCAGAGGAACCGATACGCCACCGGAGAAGGTGCC ACGTCAGATCTTACCGGCGAGTTTCGCGCCGAAGGAGAACAACAACCTCTTCGAGAGCATCATGCATAAATTCGTCAAGGTAGACGATAGCGAAAAAGTG AATCATAGCAGTGATGTTAAGAGTTTGCCTAAACCTTATTCATCATTGGGAATATGTAATGATGCCAACCATAAAGTATTGCAAAAGGAAGAGACAGGTT TTCAATTTCAACCTATGGTGAAAGATGGTAGTATAAGTTTCAAGGAAAAGACTAACAACAGAGGATTGCAAAAGGAAGAAGTGGCTTTACCATTTCAACC TATGGTGAAAGATAATGGTGTAAATTTCACAGAAAATATTAGCCGTAAAGGATTGCAAAAATTTCAATTTCAGCCTATGGCGAAAGATAATGCTGTAAAT TTCAAGGAAAAAACTAATCAGAAAAATATGGTCCCTGTCGAAACTGATAATGACATTACTGTACCAGAAACCCCAGGGATGCAGTCTCTTGCCTCACATG CAAAGCGAGGTCGAGAGGATGGATCTAAGTCTCGGTCCTTCCTGGATTCTAGCAAGCGAGTGAGATTCCTTGAGGATTTTACGGAAACAAATATGACTAA GAAGGAAGCGGAAGTGGCTAGCAGATTTGAGTGGCTTGATCCTTCTCGAATCAGGGATGCTAATGGAAGAAGGCCGAATGACCCTTTGTATGACAGAACG ACACTTTATATACCTCCAGAAGTTTTGAAAAAGATGACAGCATCTCAAAAACAGTATTGGAGTGTAAAATGTAAATATATGGACGTCATGCTATTTTTTA AAGTGGGAAAATTTTATGAACTTTATGAAATGGATGCTGAAATTGGCCATAAGGAGCTTGATTGGAAAATTACATTGAGTGGTGTGGGAAAATGTCGGCA GGTTGGTATATCTGAAAGTGGTATTGATGATGCTGTTCAAAACCTGGTTGCTCGTGGATATAAGGTTGGGCGAGTGGAGCAGTTGGAGACATCTGAAGAA GCAAAAGCTAGAGGAGCTAATTCTGTTATTATGAGAAAGCTAGCTCAAGTAGTCACTCCATCAACCTCTGTGGATGGTGATATTGGCCCTGATACCAATC ATCTTCTCACAATAAAAGAGGAAAACAATGACTTGGACAAGGGTTCAGTTGTATATGGATTTGCTTTTGTTGATTGTGCTCGTCTTAGGTTTTGGGTCGG TTCCATTGATGATGATGCATCTTGTTCTGCTTTAGGTGCTTTGTTAATGCAAGTGTCACCTAAGGAAATTATTTATGAAAGCAGAGGGCTATCTAAAGAA GCTCAGAAAGCACTTAGAAAATTCTCGTTAAATGGTTGCACAGCCTTGCAGTTGACTCCAGTGCAATCAATCAGTGAGTTGATGAACTCTGAAATTCATG ATTTAGTTCACTCGAAGGGATACTTTAAGGGGTCGTCTCATTCACTCGATAATGTGCTGAGCAAAGTGACTCATCGTGAAATCTCTGTGTCTGCTCTTGG TGGACTGATTGGTCATCTGGATAGGTTGATGTTAGACGATGTCCTACAGGATGGAGATATATATCCATATCAAGTTTACACGGGTTGCCTCAAAATGGAT GGCCAGACATTGATAAATTTAGAGATCTTTGGCAATAATGTGGATGGTGGCAAATCTGGTACATTATACAAATATCTTGATAATTGTGTGACATCATCTG GGAAACGGCTTCTCAGGAATTGGATCTGCCGTCCATTAAAAGATGTTGAAGGACTTAATAACAGGCTTGATGTAGTTGATGATCTAATGGCTCAACCGGA GATTGTGTCACATATTGCTCGACATCTTCACACACTTCCAGATTTGGAACTATTGCTTGGCCGAATTAAGTCTAGCCTTCACTTATCAGATCCTCTGTTA CTGCCACTGTTGGTTAAAAAAATATTGAAGCGGAGGGTGAAAGTGTTCGGGTCACTTGTGAGAGGGCTTCGGACTGCTTTGAGTTTATTGCTTCTTCTAC AGAATGAAAAGCCTCTTATATTATCATTGACCAAAGTTTTTAAACTTCCAATTTTGACTGGTAGTGATGGGCTTGATCAATTTCTTACTCAGTTTGAGGC AGCTGTAGATAGTGATTTCCCAAATTACCTGAATCATGATGTAACAGATTCAGATGCTGAAACACTCACGATACTTTCTGAATTATTTTTGGAGAAAGCT GCTCAATGGTTTGAAGTTGTTCACGCCATCAATTGCATTGATGTACTCAGATCTTTTGCTATTATTTCTAGTTTTTCATCTGTCAGAACTATGTCTAGGC CTGTCATTTTGCCATCCTCGGAAAGTGCAAGTAAAGACAGTGGACAACCTGTGCTTAAAATGAAAGGGCTATGGCATCCATTTGCCTTTGGAGAGAATGG ATGTTCGCCTGTCCCCAATGACATAATTCTCGGTGATAATGAAGCTGGGAATCATCCTCGCACATTGCTGCTGACTGGACCAAACATGGGTGGAAAGTCC ACACTTTTGCGTGTCACCTGTCTAGCTGTTATAATGGCCCAGCTAGGCTGTTATGTTCCATGTGAAAATTGTGTTCTCTCGGTTGTGGATATCATCTTCA CACGGCTTGGAGCCACAGATAGAATCATGGCAGGAGAGAGTACCTTCTTCATTGAGTGTTCAGAAACTGCATCAGTGCTTCAGAATGCTACTCAAAATTC CCTGGTTATACTTGACGAATTGGGTCGGGGAACGAGCACTTTTGATGGCTATGCCATTGCATATGCAGTACTTCGTCATCTGGTTGAAAAGGTCAATTGT CGGTTGCTCTTCGCTACACATTACCATCCACTCACGAAAGAGTTTGCCTCTCATCCACATGTTACCATGCAACACATGGCTTGTGCTTTACGTGATCATG GGTTAGTCTTCCTCTATCAGCTCACCCCAGGACCATGTCCAGAGAGCTATGGTTTGCAGGTTGCCCTCATGGCCGGGATCCCAGAAGATACTGTAAACGT AGCTTTAAAGGCTAGCCAACAGATGAAAAATTCAATTGGCAAAAGTTTTAGGTCAAGTGAACAAAGATCAGAATTCTCAACTCTTCATGAAGAATGGTTG AAGACCTTGGTATCTATCTCACGAATAAAGGATCATGAATCAGTTGATGATGACACTTTTGATTCATTAGTTTGTTTGTGGTATGAAATGAAGAATTCAT TTAGACTGGGCAACTAGAGATGTGTAGAGCTGGGGATAGCACTAAGAATTCATTTAGTTTAGTGATTAAGCACATTTAGTTTCATTTGGGAAACAAAAGC ATCATGTTAGCAGCGCTAACTTTATTTTGTGAATCAAAAAGACCTTTCTAACAGTTAAACGCTTCCAAGTATGGGCAAGCCGGGTATATAACATGCAATT TTCACAAACAACACTTTCATGTAGCATAGGAAACAAAAAGGGAGCCTCCTTCAATTGCTATTTTATTTTCTAGTTTTATTATTCAACATTAACAGTGTAT TTTATACCTTTGCACTTCAGTTTATTTTTATTTTTCCTCCTTCGTATCGTTTCAATGTTGGTCGAAGTATATTGTATGCAGTGC
• Tissue: pods
• Gene name: LI_gene_176656;
• Additional information: details;

Expression of Ll_transcript_489097

FPKM

• PAB: 0
• PNAB: 2.8
• PS1: 2.1
• PS2: 1.3
• PS3: 2
• PW1: 0.8
• PW2: 0.1
• PW3: 0.1

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_489097

• Blastp: DNA mismatch repair protein MSH7 from Arabidopsis with 57.49% of identity
• Blastx: DNA mismatch repair protein MSH7 from Arabidopsis with 57.49% of identity
• Eggnog: that it carries out the mismatch recognition step. This protein has a weak ATPase activity (By similarity)(COG0249)
• Kegg: Link to kegg annotations (AT3G24495)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019436646.1)
• Pfam: MutS domain I (PF01624.19)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;