Ll_transcript_489099

Id TrinityTRINITY_DN50358_c0_g1_i3
Name TranscriptLl_transcript_489099
SequenceAATGATTTGAGCGCTGAAATATCATTTCGCGCCAAACTTTTCACTTTCTTAACACACATTTGCGCCTCTTCATCGTTCACACTTCACCAAACCCTTCTAT CTCTCTCTGTTGAAGATGAATCGTCAGAAATCAATACTATCATTCTTCCAGAAAACCGCACCGGGAACCGACACTTCCGGTGGCCCGCGAGGATCCGATT CACCGGTTCAGCAAGCTAACCGTAATAAGGTCACAGCCGCTTCCAGTCATCCACCTTCCGACGATGTCAGAGGAACCGATACGCCACCGGAGAAGGTGCC ACGTCAGATCTTACCGGCGAGTTTCGCGCCGAAGGAGAACAACAACCTCTTCGAGAGCATCATGCATAAATTCGTCAAGGTAGACGATAGCGAAAAAGTG AATCATAGCAGTGATGTTAAGAGTTTGCCTAAACCTTATTCATCATTGGGAATATGTAATGATGCCAACCATAAAGTATTGCAAAAGGAAGAGACAGGTT TTCAATTTCAACCTATGGTGAAAGATGGTAGTATAAGTTTCAAGGAAAAGACTAACAACAGAGGATTGCAAAAGGAAGAAGTGGCTTTACCATTTCAACC TATGGTGAAAGATAATGGTGTAAATTTCACAGAAAATATTAGCCGTAAAGGATTGCAAAAATTTCAATTTCAGCCTATGGCGAAAGATAATGCTGTAAAT TTCAAGGAAAAAACTAATCAGAAAAATATGGTCCCTGTCGAAACTGATAATGACATTACTGTACCAGAAACCCCAGGGATGCAGTCTCTTGCCTCACATG CAAAGCGAGGTCGAGAGGATGGATCTAAGTCTCGGTCCTTCCTGGATTCTAGCAAGCGAGTGAGATTCCTTGAGGATTTTACGGAAACAAATATGACTAA GAAGGAAGCGGAAGTGGCTAGCAGATTTGAGTGGCTTGATCCTTCTCGAATCAGGGATGCTAATGGAAGAAGGCCGAATGACCCTTTGTATGACAGAACG ACACTTTATATACCTCCAGAAGTTTTGAAAAAGATGACAGCATCTCAAAAACAGTATTGGAGTGTAAAATGTAAATATATGGACGTCATGCTATTTTTTA AAGTGGGAAAATTTTATGAACTTTATGAAATGGATGCTGAAATTGGCCATAAGGAGCTTGATTGGAAAATTACATTGAGTGGTGTGGGAAAATGTCGGCA GGTTGGTATATCTGAAAGTGGTATTGATGATGCTGTTCAAAACCTGGTTGCTCGTGGATATAAGGTTGGGCGAGTGGAGCAGTTGGAGACATCTGAAGAA GCAAAAGCTAGAGGAGCTAATTCTGTTATTATGAGAAAGCTAGCTCAAGTAGTCACTCCATCAACCTCTGTGGATGGTGATATTGGCCCTGATACCAATC ATCTTCTCACAATAAAAGAGGAAAACAATGACTTGGACAAGGGTTCAGTTGTATATGGATTTGCTTTTGTTGATTGTGCTCGTCTTAGGTTTTGGGTCGG TTCCATTGATGATGATGCATCTTGTTCTGCTTTAGGTGCTTTGTTAATGCAAGTGTCACCTAAGGAAATTATTTATGAAAGCAGAGGGCTATCTAAAGAA GCTCAGAAAGCACTTAGAAAATTCTCGTTAAATGGTTGCACAGCCTTGCAGTTGACTCCAGTGCAATCAATCAGTGAGTTGATGAACTCTGAAATTCATG ATTTAGTTCACTCGAAGGGATACTTTAAGGGGTCGTCTCATTCACTCGATAATGTGCTGAGCAAAGTGACTCATCGTGAAATCTCTGTGTCTGCTCTTGG TGGACTGATTGGTCATCTGGATAGGTTGATGTTAGACGATGTCCTACAGGATGGAGATATATATCCATATCAAGTTTACACGGGTTGCCTCAAAATGGAT GGCCAGACATTGATAAATTTAGAGATCTTTGGCAATAATGTGGATGGTGGCAAATCTGGTACATTATACAAATATCTTGATAATTGTGTGACATCATCTG GGAAACGGCTTCTCAGGAATTGGATCTGCCGTCCATTAAAAGATGTTGAAGGACTTAATAACAGGCTTGATGTAGTTGATGATCTAATGGCTCAACCGGA GATTGTGTCACATATTGCTCGACATCTTCACACACTTCCAGATTTGGAACTATTGCTTGGCCGAATTAAGTCTAGCCTTCACTTATCAGATCCTCTGTTA CTGCCACTGTTGGTTAAAAAAATATTGAAGCGGAGGGTGAAAGTGTTCGGGTCACTTGTGAGAGGGCTTCGGACTGCTTTGAGTTTATTGCTTCTTCTAC AGAATGAAAAGCCTCTTATATTATCATTGACCAAAGTTTTTAAACTTCCAATTTTGACTGGTAGTGATGGGCTTGATCAATTTCTTACTCAGTTTGAGGC AGCTGTAGATAGTGATTTCCCAAATTACCTGAATCATGATGTAACAGATTCAGATGCTGAAACACTCACGATACTTTCTGAATTATTTTTGGAGAAAGCT GCTCAATGGTTTGAAGTTGTTCACGCCATCAATTGCATTGATGTACTCAGATCTTTTGCTATTATTTCTAGTTTTTCATCTGTCAGAACTATGTCTAGGC CTGTCATTTTGCCATCCTCGGAAAGTGCAAGTAAAGACAGTGGACAACCTGTGCTTAAAATGAAAGGGCTATGGCATCCATTTGCCTTTGGAGAGAATGG ATGTTCGCCTGTCCCCAATGACATAATTCTCGGTGATAATGAAGCTGGGAATCATCCTCGCACATTGCTGCTGACTGGACCAAACATGGGTGGAAAGTCC ACACTTTTGCGTGTCACCTGTCTAGCTGTTATAATGGCCCAGCTAGGCTGTTATGTTCCATGTGAAAATTGTGTTCTCTCGGTTGTGGATATCATCTTCA CACGGCTTGGAGCCACAGATAGAATCATGGCAGGAGAGAGTACCTTCTTCATTGAGTGTTCAGAAACTGCATCAGTGCTTCAGAATGCTACTCAAAATTC CCTGGTTATACTTGACGAATTGGGTCGGGGAACGAGCACTTTTGATGGCTATGCCATTGCATATGCAGTGAGCCTCTGCTCTTCAGTATTATTTATTGTC TTAATTACACCTCTGGTTCTATTTTAAGTGCTGTTGTTCTAAGCTTACTCTGAGGCCGGCATGCTCAAAATTTAAACACTCTAGGTCTTTAGTTTACTAA AATATAATTACACATGCTTACTCCTGAAGTCATGCATATTTGATTATGTTTCAATATTCTTGTCCCTCATAATAATTCTCTAACTG BLAST
Tissuepods
Gene nameLI_gene_176656; 
Additional informationdetails; 

Expression of Ll_transcript_489099

Labels

PAB abscising pods
PNAB non-abscising pods
PS1 seeds stages 1-3
PS2 seeds stages 4-6
PS3 seeds stages 7-8
PW1 pods wall stages 1-3
PW2 pods wall stages 4-6
PW3 pods wall stages 7-8

Annotations of Ll_transcript_489099
BlastpDNA mismatch repair protein MSH7 from Arabidopsis with 56.8% of identity
BlastxDNA mismatch repair protein MSH7 from Arabidopsis with 56.8% of identity
Eggnogthat it carries out the mismatch recognition step. This protein has a weak ATPase activity (By similarity)(COG0249)
KeggLink to kegg annotations (AT3G24495)
CantataDB-
Mirbase-
Ncbi proteinLink to NCBI protein (XP_019436646.1)
PfamMutS domain I (PF01624.19)
Rfam-
GOLinks to GO: General; Genes and gene products; Annotations; Ontology;
Links to GO: General; Genes and gene products; Annotations; Ontology;