Ll_transcript_489100

• Id Trinity: TRINITY_DN50358_c0_g1_i4
• Name Transcript: Ll_transcript_489100
• Sequence: CAGGCCTCTATTTTATTTTGATAGGTTTATGGCCCAATATTAATCAATATCGCTAAATAAAAAAAATGGAAAGATAACCCTACAATAAACTAATAAAAAA ACAAATAAAAAACGAAAAAGAATGGAGGGTTTTGGCCGTTTCGAGTCCCCTTTTCATAACTAAAAAATGAGTTGGATAGGATTGAAATCCCTAAATCAAC TTCTATCCTCCCTTATTTCTCTCACGCAGAAGCCATAGGAAGGGATAGAAATCCCTATTTCACGTTCTCCTCCTCCTTCTCTCTTCCCTTCTCCATCTTC GATGGTGACGCCGAGTTCTCCTCTCTCGACGGTGATTCAAACCGAAGCGGGTTGAGGAGCAGGGGTGGTCATCTCCTTCTTCGACTCTTCCTCAGCAACG GCAGCGATTGATTTGCGGCAGTGGCGACGGGACTCTTTCTTCAACGGTGGCTAAGGGTTCATGGTGGTGGAGGTGGGGCTAGAGGCTCTCATCTCTTTTC ACGGCGCCGAGGAGACAGAATCCTTAACCCCATCTTCTCTTCCTCAGCGACGGGTTCCTCTCTCCAGCAATAATTCACGATTGTGAAAGAAGACTATGGC CATGGGTGGTTCACAACCGGATCAAGGTGGTTTCGGGTTGCCTTTCGACACCGACAAACTTAAAGGGATTCGGTTGGTATATCTGAAAGTGGTATTGATG ATGTTGTTCAAAACCTGGTTGATGATATAAGGTTGGGTGAGTGGAGCAGTAGGAGACATATGAATAAGCAAAAGCTAGAGGAGCTAATTCTGTTATTATG AGAAAGCTAGCTCAAGTAGTCACTCCATCAACCTCTGTGGATGGTGATATTGGCCCTGATACCAATCATCTTCTCACAATAAAAGAGGAAAACAATGACT TGGACAAGGGTTCAGTTGTATATGGATTTGCTTTTGTTGATTGTGCTCGTCTTAGGTTTTGGGTCGGTTCCATTGATGATGATGCATCTTGTTCTGCTTT AGGTGCTTTGTTAATGCAAGTGTCACCTAAGGAAATTATTTATGAAAGCAGAGGGCTATCTAAAGAAGCTCAGAAAGCACTTAGAAAATTCTCGTTAAAT GGTTGCACAGCCTTGCAGTTGACTCCAGTGCAATCAATCAGTGAGTTGATGAACTCTGAAATTCATGATTTAGTTCACTCGAAGGGATACTTTAAGGGGT CGTCTCATTCACTCGATAATGTGCTGAGCAAAGTGACTCATCGTGAAATCTCTGTGTCTGCTCTTGGTGGACTGATTGGTCATCTGGATAGGTTGATGTT AGACGATGTCCTACAGGATGGAGATATATATCCATATCAAGTTTACACGGGTTGCCTCAAAATGGATGGCCAGACATTGATAAATTTAGAGATCTTTGGC AATAATGTGGATGGTGGCAAATCTGGTACATTATACAAATATCTTGATAATTGTGTGACATCATCTGGGAAACGGCTTCTCAGGAATTGGATCTGCCGTC CATTAAAAGATGTTGAAGGACTTAATAACAGGCTTGATGTAGTTGATGATCTAATGGCTCAACCGGAGATTGTGTCACATATTGCTCGACATCTTCACAC ACTTCCAGATTTGGAACTATTGCTTGGCCGAATTAAGTCTAGCCTTCACTTATCAGATCCTCTGTTACTGCCACTGTTGGTTAAAAAAATATTGAAGCGG AGGGTGAAAGTGTTCGGGTCACTTGTGAGAGGGCTTCGGACTGCTTTGAGTTTATTGCTTCTTCTACAGAATGAAAAGCCTCTTATATTATCATTGACCA AAGTTTTTAAACTTCCAATTTTGACTGGTAGTGATGGGCTTGATCAATTTCTTACTCAGTTTGAGGCAGCTGTAGATAGTGATTTCCCAAATTACCTGAA TCATGATGTAACAGATTCAGATGCTGAAACACTCACGATACTTTCTGAATTATTTTTGGAGAAAGCTGCTCAATGGTTTGAAGTTGTTCACGCCATCAAT TGCATTGATGTACTCAGATCTTTTGCTATTATTTCTAGTTTTTCATCTGTCAGAACTATGTCTAGGCCTGTCATTTTGCCATCCTCGGAAAGTGCAAGTA AAGACAGTGGACAACCTGTGCTTAAAATGAAAGGGCTATGGCATCCATTTGCCTTTGGAGAGAATGGATGTTCGCCTGTCCCCAATGACATAATTCTCGG TGATAATGAAGCTGGGAATCATCCTCGCACATTGCTGCTGACTGGACCAAACATGGGTGGAAAGTCCACACTTTTGCGTGTCACCTGTCTAGCTGTTATA ATGGCCCAGCTAGGCTGTTATGTTCCATGTGAAAATTGTGTTCTCTCGGTTGTGGATATCATCTTCACACGGCTTGGAGCCACAGATAGAATCATGGCAG GAGAGAGTACCTTCTTCATTGAGTGTTCAGAAACTGCATCAGTGCTTCAGAATGCTACTCAAAATTCCCTGGTTATACTTGACGAATTGGGTCGGGGAAC GAGCACTTTTGATGGCTATGCCATTGCATATGCAGTACTTCGTCATCTGGTTGAAAAGGTCAATTGTCGGTTGCTCTTCGCTACACATTACCATCCACTC ACGAAAGAGTTTGCCTCTCATCCACATGTTACCATGCAACACATGGCTTGTGCTTTACGTGATCATGGGTTAGTCTTCCTCTATCAGCTCACCCCAGGAC CATGTCCAGAGAGCTATGGTTTGCAGGTTGCCCTCATGGCCGGGATCCCAGAAGATACTGTAAACGTAGCTTTAAAGGCTAGCCAACAGATGAAAAATTC AATTGGCAAAAGTTTTAGGTCAAGTGAACAAAGATCAGAATTCTCAACTCTTCATGAAGAATGGTTGAAGACCTTGGTATCTATCTCACGAATAAAGGAT CATGAATCAGTTGATGATGACACTTTTGATTCATTAGTTTGTTTGTGGTATGAAATGAAGAATTCATTTAGACTGGGCAACTAGAGATGTGTAGAGCTGG GGATAGCACTAAGAATTCATTTAGTTTAGTGATTAAGCACATTTAGTTTCATTTGGGAAACAAAAGCATCATGTTAGCAGCGCTAACTTTATTTTGTGAA TCAAAAAGACCTTTCTAACAGTTAAACGCTTCCAAGTATGGGCAAGCCGGGTATATAACATGCAATTTTCACAAACAACACTTTCATGTAGCATAGGAAA CAAAAAGGGAGCCTCCTTCAATTGCTATTTTATTTTCTAGTTTTATTATTCAACATTAACAGTGTATTTTATACCTTTGCACTTCAGTTTATTTTTATTT TTCCTCCTTCGTATCGTTTCAATGTTGGTCGAAGTATATTGTATGCAGTGC
• Tissue: pods
• Gene name: LI_gene_176656;
• Additional information: details;

Expression of Ll_transcript_489100

FPKM

• PAB: 0
• PNAB: 2.3
• PS1: 0
• PS2: 1
• PS3: 1.2
• PW1: 0
• PW2: 0
• PW3: 0

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_489100

• Blastp: DNA mismatch repair protein MSH7 from Arabidopsis with 63.92% of identity
• Blastx: DNA mismatch repair protein MSH7 from Arabidopsis with 63.92% of identity
• Eggnog: that it carries out the mismatch recognition step. This protein has a weak ATPase activity (By similarity)(COG0249)
• Kegg: Link to kegg annotations (AT3G24495)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019436646.1)
• Pfam: MutS domain II (PF05188.16)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;