Id Trinity | TRINITY_DN50411_c0_g1_i7 |
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Name Transcript | Ll_transcript_345197 |
Sequence | GCCAGTTTAAGAAAGCTGTGAAAAAATGATATCTAAATTAATTAATAAGCTGAATAAGGAAATTAGTTAGTGAGATTCAAAAATAATAAAATCTAAGCTT TTATTATTATCATATATTGCAGGTAGATAGAGAGAGAGAGAGGGTGTAAACGCGTATAGCAGTTGAGAAACAGTGATAGATAGATCTGTTTTGGCTTTTG AGAATAAGAAATAATCACAACCGATGGGAGAGGTGGCGCGTGGAGGTGGTTGCGCTCCGATGGATCTCTTCCGTTCCGAGTCGATGCAACTCGTTCAACT CATCATTCCAATCGAATCCGCTCATCTCACCGTTTCTTATCTCGGTGACCTTGGCCTCCTTCAATTCAAAGATCTTAATACAGACAAAAGCCCTTTTCAA CGGACTTATGCTGCTCAGATAAAAAGATGTGGAGAGATGGCTCGTAAATTACGTTTTTTCAAGGAGCAAATGTTGAAGGCAGATGTTTTACCAGTACATT CTACAACAGTGGTTGATGTGAACATTGATGATCTTGAGGTAAAACTTGCTGAAATTGAGTCAGAGTTAACCGAGATGAATGCAAATGGCGAAAAGTTGCA ACGCTCTTACAATGAACTTGTGGAGTATAAGCTTGTTCTGGAGAAGGCTGGTGAATTTTTCCACACTGCTCAAAGCCGTGCCATAGAGCAGCAGAGAGAA AATGAATCACGCCAACTGGTTGATGAATCTTTGGAAACACCTTTATTGCAAGACCAAGAATTGGTAGGTGATTCATCGAAGCAAGTTAAATTGGGCTTTT TAGCTGGTCTTGTTGCCAGGGAAAAGTCTGTGGCATTTGAGAGAATTTTATTTCGTGCCACCAGAGGCAATGTGTTTTTGAGGCAGTCTGCTGTTGAGAA TCCTGTCACAGATCCGGTTACTGGAGAAAAGACTGAGAAAAATGTATTTGTGGTCTTCTATGCTGCCGAAAAAGCGAAATCCAAGATTCTGAAAATATGT GACGCCTTTGGCGCTAATCGTTACCCTTTTGCAGAGGATGTTGGAAAACAAACTGAAATGATAAAAGAGGTATCCCGAAGAATTTTAGAATTGAAGACAA CAATAGATGCTGGACTGCTGCATCGGGCTACCTTGCTACAGACTATTGGTGATCAATTTGAGCAATGGAATCTTTTGGTGAGGAAGGAGAAATCTATTTA CCATACCCTGAACATGCTAAGCCTTGATGTGACGAAAAAATGTCTTGTGGCTGAAGGGTGGAGTCCTGTTTTTGCAACAAAGCAGATCCAAGATGCCTTA CACCGGGCAGCAATTGACGCTAACTCTCAAGTTAGTGCCATTTTGCAAGTTCTGCATACTAGAGAGTTGCCACCTACATATTTCCGTACAAACAAATTTA CTTCCTCATTTCAAGGAATTATTGATTCATATGGGGTTGCGAAGTATCAAGAGGCAAATCCTACTGTGTACACTGTAGTTACCTTTCCATTTCTTTTTGC TGTTATGTTTGGTGATTGGGGACATGGAATATGTATACTACTGGCTGCTCTATATTTCATAATTCGGGAGAAGAAACTTTCTAGCCAGGTAACCTTTTAT TTTACAATGAAAATTCTTCCTTCTATGAAAGTATTAAAAAGAAATGTTATATTTTGATGGGAAAAGTTAGATTGATTTTCTCTACTTTTTGTCTAAAATG TCTTATTAGATGTCTCATGCTATATATGCATGATAGATCTATATGCAGGAACATATTTAGACCATGTTGGTAAATAATCTTGGTATTTTGACAAGGTTAG AATCCTTATGGATTAATGAAAACCTTTGGAAATCTTTTGTGGTAACAGTTCTTTATGGCAACCACAGAACTCTTCCATAGCATATTCAGTAATTTAATAA TTTTCAAAGGTTCATATTGCTGCCTGATAAGTGAGACAATTTTCAAGTGTGTGGAACACTGCTCTTTTCAACACCATGCACCAAGAGTGCTTGAATTCAT TGAAATCAGTGGTTTTTGTTACTGTAAAAAGGCCATATTTTTTGTGTATTAGTTTAGATGGTCACCCTCCCTATTGAATTTTGTAATTGTTGCAAAATGC AACAGACTTACCAACTAAGGCAACTGGCACCTTTGTCCATATTCCATTGTTGCTATTAACCAGATGATGAAAAAAGTCTGTAAAATCTGTTGATTGACAT TTGACAGTTCGTTTGCCATCAATTTCTGCCCAGTAGTGTTTTATTTTTGTTCCTCTTGCATAAATATATTTCAAGGCCTTTTTTGTTTATAAAAACAGTT TTCTAACATTAAATCTTTTGGTGATAAACAGAAGCTTGATGACATCACAGACATGACTTTTGGAGGACGTTATGTTATTTTAATGATGGCAATCTTTTCA ATCTACACTGGTTTCATATATAATGAGTTCTTCTCTGTCTCATTTGAAATCTTTGGTCCTTCTGCCTATGAATGTCGTGATCTGTCTTGCACGTAAATCA AATCCCTTAATTCATAAAATTTAATATTGTATTTTATGCCTTTAGAAATTTAGTCACCGTCCTCTTGTCCTTTTCTCTACTTTTTTTTATGTAGGGAAGC TACAACAGTGGGCCTGATAAAAGCGCGTCGTACTTACCCATTTGGTGTGGATCCTGTATGGCATGGTTCACGAAGTGAATTACCATTTCTAAACTCCTTG AAAATGAAAATGTCCATTCTTCTTGGGGTTGCTCAAATGAACCTTGGAATTATAATGAGCTTTTGTAATGCTAAATTCTTTAAGAACAGCGTAAATGTAT GGTTCCAGTTTGTTCCCCAGATAATATTTCTCAACGGTCTATTTGGCTACCTATCCCTTCTTATTATTGTGAAGTGGTGCACTGGTTCTCAAGCTGATTT GTATCATATATTGATCTACATGTTCCTGAGCCCGACAGATGATTTGGGTGAAAACCAACTCTTCGTTGGTCAGAAATATCTGCAGATTACACTTTTGATT CTGGCCTTTATCGCTGTGCCTTGGATGCTGATCCCAAAACCTTTTATTTTGAAGAAGCAACATGAAAATAGGCACGGGGTTGAATCTTATGCACCACTTC AAACGACAGAGGAAAGCTTGCAAGTAGAGTCAACTCATGATTCCCATGGTCATGAGGAATTTGAGTTCAGTGAAGTCTTTGTACATCAACTCATACACAC CATAGAGTTCGTACTTGGAGCAGTTTCTAATACAGCTTCTTACCTTCGTCTATGGGCCCTTAGTCTTGCTCATTCAGAGTTATCAACTGTATTCTACGAG AAGGTTCTGCTAATGGCATGGGGGTACCATAACGTGTTTATCCTGATAATCGGTCTCATTGTCTTCATATTCGCTACGGTTGGAGTGTTGCTTGTGATGG AAACTCTGAGCGCCTTCTTGCATGCTTTACGTCTTCACTGGGTGGAGTTCCAGAACAAGTTTTATGAGGGGGATGGTTACAAGTTCAATCCTTTCTCATT CTCATTGATAGAAGATGAGGATGAGTGATGGGTTTAAAATGACATTAATAAGGTGTGGTTATGTAGCTTTGGACTTTTATTGATTCTTTCATTTGCCTTT TCAATTCAGTTATCTGAGGATTGTATATTGTGTAATCCTGGGAGCCTTTTCATACAACACCATTATGCATCTTTGTTTATTGATGCCTTTGAGAGAATAA ATGTATCTCCCTATTAGGGGAGTAACTTTGTGTGATCTTCTAGGCTCCCAGGCATGGCGGTGTAATAATTATAAGATAACTTAATATTTTATATACTTTT GTTTTCTTTTCTAAAAAATGATTGATATTTATTATGATATCATAAGATGCATACTATCATAAGAGAATGGTGAGGCTTTTGTACTCTTAATTATAGTTCG ACCAGC BLAST |
Tissue | pods |
Gene name | LI_gene_177010; |
Additional information | details; |
PAB | abscising pods |
PNAB | non-abscising pods |
PS1 | seeds stages 1-3 |
PS2 | seeds stages 4-6 |
PS3 | seeds stages 7-8 |
PW1 | pods wall stages 1-3 |
PW2 | pods wall stages 4-6 |
PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_345197
Blastp | V-type proton ATPase subunit a3 from Arabidopsis with 73.48% of identity |
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Blastx | V-type proton ATPase subunit a3 from Arabidopsis with 73.48% of identity |
Eggnog | ATPase 116 kDa subunit(COG1269) |
Kegg | Link to kegg annotations (AT4G39080) |
CantataDB | Link to cantataDB annotations (CNT0001114) |
Mirbase | - |
Ncbi protein | Link to NCBI protein (XP_019454213.1) |
Pfam | V-type ATPase 116kDa subunit family (PF01496.18) |
Rfam | - |
GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |