| Id Trinity | TRINITY_DN50426_c0_g1_i12 |
|---|---|
| Name Transcript | Ll_transcript_347036 |
| Sequence | ACTAGACAAGGATTTTGAAAGAGAAAACCCTAAGCAGAGAGAGAGAGAGAAACATCAATGGCGGAACATCTAGCATCTATCTTCGGCACTGAGAAAGACA GAGTTAACTGTCCCTTCTACTTCAAAATCGGAGCTTGTAGACATGGTGATCGTTGTTCAAGACTCCACACCAAACCCACCATTAGTCCTACAATCCTTCT CTCTAACATGTACCAAAGGCCTGATATGAACATCAACATCAATTTCAATGGTTCTGATCCTAATCAACCTCCACCACCTGAACCTCCTCAGTCTCAATCT CAGTCTCAATCTTCTCTTGACCCTGATAAGGTGCAGGATCACTTTGAGGATTTTTATCAAGATCTCTTTCAGGAGCTTAGTAAGTATGGTCAGATTCAGA GCTTGAATATTTGTGACAATTTGGCTGATCATATGGTTGGCAATGTGTATGTTCAGTTTAAAGAGGAAGACCATGCTGCCAATGCTCTTATGAATCTCAC TGGAAGATTTTACTCAGGTGCTCATTACTCCTCATTTATACTTAAGGGTTGTTATATTGTGAAGTATGTTTTTAATTCATCTTCAAGGAACCATTTTCTT TTATTTTGAGTTCAGGATTTCATGGGCTACTGTCCATCATTATTCATGGGTTTGGATATGTTTCTAGTTGTTGTTGCTTGAAATATGAGTTATTGCAACT GTAAACTAATTGCTCGGCTCTTTATAAATAAGAGAAATACCCAAATTCATTCCAGAGCACACACACCTCTCAATTTAGTTCCTGGAAATGTTCCCTAAAA ATCTCAATTGTCAGTCAAATTAGTCCTTTTCCGGGTGAACTGTTCTCACAAACCAAATAGAGGTTTTTCATTTGTCAAGAACTAAATCGGGTGGCACATT TCTTCGGACGAGTGAACTTAGATATTTACTCTAGTAGCAATAATACTGATAAGAGAGCCTTTTTTCAATAAAGATTATTCTCTTTTCTCTCCTTTTGTGT ATGCAAAGTTAATATTCATATTGGTTTCAGGTCAATAGGTTGGAGATATTATGCCCAACTGGTTTGGCTTGAACTCCTTATGTTTACCTTACTGTAGCCA CCATTGTTCGCCCTTCTTTTATTCGTGTTGGAGTTTTGGACTTTATCTGATGAAATGCATTTTGACCAGGTCAACCAATCATTGTTGATTTCTCTCCTGT TACCGATTTTCGAGAAGCTACTTGTAGGCAGTATGAGGAAAATGTATGCAACCGAGGTGGCTACTGCAACTTTATGCACCTAAAGAAGATTAGCAGGGAA TTGAGAAAGGAATTATTTGGGAGAAACAAGCGATGGAATGACCGTGGTGGAAGCAGAAGTCGGAGTCCTCCAAGGAGTCATGCCTATGAGGAACATTCGC ATTCTGGTCGTGGTTCTGGTAGAAGAGATGTTGACAGGTATCATGGCAGTCGTGATAGGAGGCCTAGAAGCCGTAGTCCTCGACGCAGAGAAAAACGAAG TAGGAGTCCTGTGGACAGGAATACTAGACGGGCCAGAGAGAGTAGTGCAGAAAGAAGAGCTAAAATAGAGCAATGGAACAGGGAGAAGGAACTGGGAGAA TCTGGTAACAAGAATAATACCAATAGCAATGATTATGATGAAGAGGGTGCTGCGCAAAATGGTAGGGAATCTGGTGACCATTAGATATAGCATCATCATC ATCATAGAGATTTGGTCCAAAATGGAGGAAAAAAACTTTCCGGTTCATGGCGAGTTGGGTTTTGAAAGGAAAAGGAAAGCTTCAGTATCATGAAATATAC ATGTGATATGACTCTGTAGCCTTTCATCTCTATTTATGCTTTTCCAAAACTCAACTCGAAACTGAGTCATTCTTTACCCCTATTTAGTTTGGTTTTAGTT ATTTGTGTTTTATTATCCTGTTCTGAATTATCTAGTTATAGAACTTTGTAATATCTACCAATGGCAGTTAAGTTTTCCCCTTAAAGTGTAATGTTCCTGC ACCTTGAATGGAGATTTTTTAAAAATTATTTCAGC BLAST |
| Tissue | pods |
| Gene name | LI_gene_177141; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_347036
| Blastp | Splicing factor U2af small subunit B from Arabidopsis with 70.78% of identity |
|---|---|
| Blastx | Splicing factor U2af small subunit B from Arabidopsis with 68.39% of identity |
| Eggnog | auxiliary factor(ENOG410Z5PX) |
| Kegg | Link to kegg annotations (AT5G42820) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019444288.1) |
| Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) (PF00642.23) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |