Ll_transcript_347040

• Id Trinity: TRINITY_DN50426_c0_g1_i16
• Name Transcript: Ll_transcript_347040
• Sequence: GAGTAAGTATGGGGAGATTCAGAGCTTGAATATTTGTGATAATTTGGCTGATCACATGGTATAATATGCTTTCTTATACCTTGTTTGTTTTTTTGGGTAC TACTAAGCGTATCGTGTCACATTATGGATGAAAAACTAATCTTGGGGTTGTGTGACTGTCCTGCCAACAATTGTCGCACACAGGAATCAAACCTTTTACT TTCTGGGATCTAGCAGGCTTTATACCACTTGACCAACGCCCTGTGGGCTTGTTTGTTTATAATTAGGGGAAAAATCATTAATTTATTGATTTTATTTTTA ATGACTTTTAGTAAAATTTTGTTGTTTGTTTAGGTTGGCAATGTGTATGTTCAGTTTAAAGAGGAAGACCATGCTGCAAATGCGTTAATGAATCTGACTG GAAGGTTTTATTCAGGTGCTGCATACTCTTTCTCCTCTTTTTGCGCCCCTTGGTTTTAATAAAAATGCAAGGGGTTGCTCGTATTATCGGAATTGTTTTA TTTGTATTTATGATTTATGATGAGGTTATTTTTTGGTGTCTCTGGCGAAAAATTATGGGAGGAGTTTTATATGATGAATTGTATGCATATGAAATGCTAA ACTGGGTGAAAGTTGAAAGTTATTTTTGACATGGTTGTTGAGGAATCAAATAATCAATTCAATTAACACCTGTGTTGTTGTTTCAACCTTTTAGGTTATT TTACGTCTAAATTATTTTTCAATTCATCTTTAAGGAACACTTATCTTTTTGTTCTGTTCATGACATCATGCATTGCTTTAATAACTATGGAAGTTAGTAG TTATCTAAACTAATTGCTGGGATGTGCTGTTGTATTACAAATAATTGCAACATCATCATTCGATATGCATTTCTTTATCTCCCGCTTAAGAAAAGTTGGT ATTTAAGTTGGTTTCATACCAATAGATTGGAGATACATGGTTTTCTGTGAACTCTTAATGTTTACCGTGATTTTTTGCCACTTTTACTTGGCCTTTCTTC ACTCTTGTTTGAATCGTTATCTTTCTACTGTCTAATCTTGTCTTTAATTGTTATACATCAAGTTTTGTGCTTAGTTAGGATATGATTGGGCTGATGTGAT CCCTGATATTCATTTCCTCTGGGAATAAGTTTATTTATTTTTTGTTTCTATTACACCTATTGACAATTGAAATAACAAAATTGATTAGAACTCTTTGGTG ACACAAACATTATACATGAAATTTGTTTCGAAAATATCATGAAGCTCATCCATCAATTTTTTTATTTTTATTATTGGGAATTGGTTTCTATTGTTCAAGT TGTTGTGTATACTCAGTACCTTATCAAATGGTGACAATTGTTACAACGACAACAACCAAGCCTTAATTCCATTAGTGGGAACGGCTACGTGGATTAAACG ACGCCATAATGTTGTATCTCATAAATCATGTTTATTGTGATAAAAACTTATAACTCAATGATTACTCTAGGTCGGCCCATCATTGTTGACTTCTCTCCTG TGACGGATTTTCGAGAAGCTACTTGTAGACAGTATGAGGAAAATGTCTGTAATCGTGGTGGCTACTGCAACTTTATGCATCTAAAGAAGATCAGCAGGGA TTTGAGAAAGCGGTTATTTGGAAGAAGTAGGCGCTTTCATGGCCGAAGTGGAAGCAGAAGTCAAAGCCCTCCAAGGAATCGTAAGCATGAGGAGCGTTCA CATTCTGGTCGTAGTTCTGATAGAAGAGATTATGACAGACATCATGGCCACCATGGTGGTAGGGACCGGTTGCCCAGAAGCCGTAGTCCTCAACGAAGAG CAAGACGAAGTAGAAGTCCAGCAGGAAGGGATAGGTCAGCCAGAGAAAGTAGTGAAGAAAGGAGAGCCAGAATAGAGCAATGGAACAGGGAGAAGGAACT GGCAGATTCTGGTAACAAGAACAATACCAATGGCAATGATCATGAAGAACATGATGAACAAAATGGAAGTGAATCTGGTAGACACCAGAACGACCAGATA TAGTTGCTGCACTGTCACTTGTGACCCAAAAAGAAGAAGGACCGTGTAGTTTGGCAAGTGAGTTGGTTTGTCTAGATTGCACCTACTAAGTTGGTTTTTA GTTGCTAGCATCTTATTGTCTTAATCTGAACTTCTGTTGCTTAGTTATAGAACATTGTAGTATCTAGACCAAGAGCAGTTTAATTTTGCCGCATCAAAGT GTTATACTCCTGCACCATGGAGGGAGGGATAGAGTGGAAAAATCGAGGTAATGTTTGAAAAAGATTTAATCTTTTTGAGGGGTCAGTGATGAAGTTGTAG AAAGATCGGTTTTGGTTTGGGCGTTTCACACCTTAGAATCAAGTAGACGGGATTTGATGGAAACGGGTGGAAATGGTGCATGTATCTAGATTTTAGACTG CATATATTTCAGCTGGAGAATTTTATGATACCTTTTTATTTGGAACTTCTACAAATTTGGTTTTATTGATAACAGGTTTAGTTATTCAATGAATTTTTAT GCAAAATTCAGTGTTTCAATACACTGACATTGCATCAAATATCTGTGCTATTAGGTCAATTGCTTTTTGATCTTTATTTATTGGCTTGAGTTTTGGATGA ATCATCCAACAACTAAATTTGCATTTGGGACTCCAATCTTGAATACAG
• Tissue: pods
• Gene name: LI_gene_177141;
• Additional information: details;

Expression of Ll_transcript_347040

FPKM

• PAB: 0.5
• PNAB: 0.5
• PS1: 0.2
• PS2: 0.1
• PS3: 0.6
• PW1: 0.1
• PW2: 0.1
• PW3: 0.7

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_347040

• Blastp: Splicing factor U2af small subunit B from Arabidopsis with 55.03% of identity
• Blastx: Splicing factor U2af small subunit A from Oryza sativa with 88% of identity
• Eggnog: auxiliary factor(ENOG410Z5PX)
• Kegg: Link to kegg annotations (AT5G42820)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019453322.1)
• Pfam: Zinc finger C-x8-C-x5-C-x3-H type (and similar) (PF00642.23)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;