Ll_transcript_345602

• Id Trinity: TRINITY_DN50430_c1_g1_i20
• Name Transcript: Ll_transcript_345602
• Sequence: CATGTTATGATTGCTTCCTTACTTAACAGTATAGCTGTTTATATGTTTCGGTTTGGGATTGGCAATGACATGCCTTGTTATGTGCATTTTGATATTGATT AGCATTGAATGTGCATTTTGATGAATGTATATAGTTGTGTTTCATTTGGTAGAAATTCACCAAACTCAATTTTTGTTATGGCTTGACTAGCTGAGAAATC GGGCTAGGTTGCATTAGATCAAACCTGGAGTCTTGAAAACGGGAAAATTATTATGTGATCTATGAAGGGTTCATAAGGTTGGAAGGTTGTTCTATCATTT GACGAGCTTGTGATTTTTGGTAAGCACAGGCTTACAGGTTTAAATCCTAGATATGTCAGTCTCTTGGGGTTATCCTTGTGAATCTCTTGGGCCTGGCGTA GTTTGTCTACCTTTGACCGGATTGGACTCGTAATCTGACTTGGTCCCTAGCTGACCACAATATAGATAATTACAAAAACATTGATTATTTTATGGAGAGG TGGATCAGTTGTTTGTGAAATTGACTTTTCAATTAAATTCATTATTTTAATGGTTGATTAATCAGTCAAGGTGTTAAATCTCAATGTGGATCTTCCGATC TTATGGTATAAAGACTCAAGTTTGAGAGATCCACCTATTGAAAGACTTGTCATTGCAGAATAAATATATTTGGCTAGTTATTTCTGTGCCATGAAAGTTT TTGGAGGCGATGTGGAAACCGATAGTGGGGATCTGGATAATAACTACATGGCAGTATACAACCATGTGTTTCTGCAACTGGTTGGCATGCCCCATTAATG TCTTGCAGAGGAAATCAGGACAACATTGTGTTTACATGTTTATATTATTTATTTCGGTTTGATATTCATTGCACGTGCCCTTCATTTGAGGTTAGCTTTT CTAACAGTCTTTTCTGTTGTTGCTTTCCTTGGTATGTTGAATGGATCAGATCTATGGCTGCCTAGGAGTGAAAAGATGATCAATGACATGAAGTTATTAT CTTATGTTCCTTGTGTGTTCATGTGGTATGAGAATCTAGATTGGTGAAACTGAATAGATACTTAATTGGAAATAAATGAGCCACTAAATTGCACTGATCT CCCCTTCTAAACTCTCGTTTTAATTGACTTTTATTTTCCCGGGAATGCATATACTGGGAAAATTGAACAGGATGCACTTGTCTGATAAACATGTTCATCC AGGATGATTTGTAATTTTTGAAAGTAGAGGGTCCATTTTTTTATTAGTATTATTGTGCTTTCCTTGATTAGTTTGGATTGGAATGCTTAGCATATGTATT GCCCTAATAAAATTTCTTGCTTGTGGGTTCTGCTCTTTGTAACTTTTTTTGATCAGTTATTCTGTTAAATAAATTCTATAAAGGAAGGGAGGGAAGAACA TAGTAGAATGATGGGAGAAAAGATTGATCCATCTATAATTATATATTTTTTATGTAGATCTACAAATTTAGATTCATGGAGTCCTGAGCAACTAAAAACG ATGAGCTTTGGGGGAAACAATCGTGCACAGGTTTTCTTTAAGCAACACGGTTGGACTGATGGTGGTAAAATAGAGGCCAAATATACATCAAGAGCTGCAG AGTTATATAAACAAATACTTTCTAAGGAAGTAGCTAAAAGTATGACTGAGGAAGCAAGTTTACCATCATCTGTTGTTGCTTCTCAGTCTCCACAAGTGGC TAATGGACTTCCGGAAGTAAGAACCAATGAATCACCAAAAGAAAATAGTCTGGGGAAGACTGAAACGCTTGAGAGCACTTCTTCACCTAGAGCTTCACAT ACAACATTTTCCAGTACTGTAAAGAAATCTATTGGTGCTAAAAAAACTGGGAAGACTGGGGGACTTGGTGCCCGGAAGCTTGCTAAAAAGCCAAGCGAGT CTCTCTATGATCAGAAGCCAGAAGAACTACCTGCTCCAGTTTCTTCCTCAGCAAACGACAATTTGCCTACTGGACCATCACCGCCATCTCGCTTTGGGTA TGTAGAAAATGTCCAGTCATCTGATTTGACTTCTGTAGATGGGGATAAAAATGTGCTTGGTCATGTGTCCATACCGAAGTCATCAAGCTTCTTTGCAGAC TTTGGAATGGATAGTGGTTTTCCAAAGAAGACTGTGTTAAATTCCTCAAAAGTGCAAATTCAGGAATCTGATGAAGCAAGAAAGAAGTTCTCAAATGCTA AATCTATTTCTTCATCCCAATTTTTTGGAGATCAGAACAAAGCTGAAGATTTGGCTGCTCAAGCTTCTTTGTCAAAGTTTTCAGGTAAAACTGCCATCTC TAGTGCTGATCTTTTTGGTGACTCAGACTCCTCCATTGATCTTGCTGCTAGTGACCTCATCAATCGAATATCATTCCAGGTATGCTTTTCGATTTAGAAC TTAACTGTTCATGTCTTCAATCATCTTGCCGGTGTTCTATAAAGCATATACACTTCAAAATAGTAGTTGTGTCCATGCTGCAGACACTTTCTGGCATTCC TTACTATTTTCTACAACTTTCTACATTTACTTTTTTGAATTTTTATACTGTTATGGGAGGGGAATGTCACAATAATTAAACAAATGTTAGTTATCATGTT AATAATTTACAATTACTCCTGTAACTTTTAAACATCATTCTTCTCCTTTTATTTAAGATTTGTGCTTTTATATGTTAACCTTGTATTAATTT
• Tissue: pods
• Gene name: LI_gene_177180;
• Additional information: details;

Expression of Ll_transcript_345602

FPKM

• PAB: 1.3
• PNAB: 1.7
• PS1: 1.5
• PS2: 1.7
• PS3: 1.6
• PW1: 1.6
• PW2: 3.2
• PW3: 2.7

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_345602

• Blastp: Probable ADP-ribosylation factor GTPase-activating protein AGD8 from Arabidopsis with 62.19% of identity
• Blastx: Probable ADP-ribosylation factor GTPase-activating protein AGD9 from Arabidopsis with 56.65% of identity
• Eggnog: domain, ankyrin repeat and PH domain(COG5347)
• Kegg: Link to kegg annotations (AT4G17890)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019424297.1)
• Pfam: -
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;